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asterix-gerrit.ics.uci.edu / hyracks / 11ed1cb48f35e89a9c67bb25be7e738a98f40b93 / genomix / genomix-data
  1. 11ed1cb clarify flipNeighbor instead of flip in EDGETYPE by Jake Biesinger · 12 years ago
  2. 35c7f67 remove Comparable from non-key datatypes by Jake Biesinger · 12 years ago
  3. 4f42598 use SimpleBubbleMerge in driver by Jake Biesinger · 12 years ago
  4. 7d68ba4 Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  5. 4369e4a remove unused readIDIterator by Jake Biesinger · 12 years ago
  6. 35ac37c remove fromByte function in DIR by Jake Biesinger · 12 years ago
  7. 68bf4b8 rename setByRead to setFromStringBytes (and for reverse) by Jake Biesinger · 12 years ago
  8. 050323b FRAME_SIZE and FRAME_LIMITS are (only) set in the conf by Jake Biesinger · 12 years ago
  9. a503607 refactor jar distribution function to use getAbsolutePathFromURI by Jake Biesinger · 12 years ago
  10. 34e4b0c respect -graphClean_maxIterations in P* by Jake Biesinger · 12 years ago
  11. 83af358 static is redundant on enums by Jake Biesinger · 12 years ago
  12. c8dc2d1 remove -port and -ipAddress in favor of reading from conf by Jake Biesinger · 12 years ago
  13. d20e770 remove extraArguments from jobConf parser by Jake Biesinger · 12 years ago
  14. 773abad remove apache commons logger in minicluster.DriverUtils by Jake Biesinger · 12 years ago
  15. 9034bec remove TEXT output for HyracksDriver by Jake Biesinger · 12 years ago
  16. 2279e99 remove kmerSize from GenomixReducer by Jake Biesinger · 12 years ago
  17. ac60f5b plot histograms of all statistics (in bubble gum red...) by Jake Biesinger · 12 years ago
  18. 4a1435f Rename previous/next to forward/reverse by Anbang Xu · 12 years ago
  19. 07b12a0 Code review on BubbleMerge -- 2013.9.26 by Anbang Xu · 12 years ago
  20. 3747ef3 Move initVertex() to step1 by Anbang Xu · 12 years ago
  21. b41f87f Code review on removeTip -- 2013.9.25 by Anbang Xu · 12 years ago
  22. 6bb2077 add STATS step, saving counters to txt file by Jake Biesinger · 12 years ago
  23. 31f93d6 refactor driver init by Jake Biesinger · 12 years ago
  24. 1a0ca94 restrict -pipelineOrder: BUILD* must occur at most once and come first by Jake Biesinger · 12 years ago
  25. 0d1f7ba Apply logReadIds to EdgeWritable by Anbang Xu · 12 years ago
  26. f65b2e5 Add logReadIds option to driver by Anbang Xu · 12 years ago
  27. be75f8e fix another NPE for -debugKmers by Jake Biesinger · 12 years ago
  28. 09036bb add cmdline option to specify kmers to log by Jake Biesinger · 12 years ago
  29. a3ec17d Merge branch 'genomix/fullstack_genomix' into wbiesing/refactor_p4 by Jake Biesinger · 12 years ago
  30. b633dc3 Merge with main branch after some refactor by Anbang Xu · 12 years ago
  31. d47cd28 add 10 test cases for edgelistWritable by Nan Zhang · 12 years ago
  32. 52cb426 small tweaks for Edge Test by Nan Zhang · 12 years ago
  33. 1c73130 Refactor removeLowCoverage by Anbang Xu · 12 years ago
  34. 9908512 Refactor tipremove by Anbang Xu · 12 years ago
  35. 14f3c71 Add DIR.edgeType() to covert dir to edgeTypew by Anbang Xu · 12 years ago
  36. 0958af1 Pass tests by Anbang Xu · 12 years ago
  37. 88e742e Fix other pattherns by Anbang Xu · 12 years ago
  38. 205471f Apply EDGETYPE to P4 by Anbang Xu · 12 years ago
  39. f7d0baf Add enum EDGETYPE by Anbang Xu · 12 years ago
  40. ada697a add option for verbose and log (one of) the problem kmer(s) by Jake Biesinger · 12 years ago
  41. f709d73 Merge with Jake's refactor branch by Anbang Xu · 12 years ago
  42. af493b5 Prepare to integrate by Anbang Xu · 12 years ago genomix/anbangx/before-pathmerge-refactor genomix/old-code v1.4
  43. 72db6e0 Code review on genomix-data -- 2013.9.20 by Anbang Xu · 12 years ago
  44. 71ddf5f BUGFIX: EdgeListWritable makes a deep copy by Jake Biesinger · 12 years ago
  45. a100ad9 BUGFIX: make a deep copy in EdgeListWritable by Jake Biesinger · 12 years ago
  46. 4494560 code review on P4 refactor by Jake Biesinger · 12 years ago
  47. fc3ddfa more helper functions for DIR and DirectionFlag by Jake Biesinger · 12 years ago
  48. ec97be2 Integrate with Jake's enum mergeDir by Anbang Xu · 12 years ago
  49. bc17671 Add some function util by Anbang Xu · 12 years ago
  50. a44ad6f Helper functions for DIR by Jake Biesinger · 12 years ago
  51. ff90e10 Add an iterable for Edge keys by Jake Biesinger · 12 years ago
  52. e248d53 add CHECK_SYMMETRY to driver by Jake Biesinger · 12 years ago
  53. c91c084 code review on genomix-driver -- 2013.9.18 by Anbang Xu · 12 years ago
  54. 4da7e66 add CHECK_SYMMETRY to driver by Jake Biesinger · 12 years ago
  55. 1848aa3 Process information before sending message by Anbang Xu · 12 years ago
  56. 1491f7f refactor to use general NEXT and PREVIOUS directions by Anbang Xu · 12 years ago
  57. 53cc7e3 Merge branch 'wbiesing/debug' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  58. 2bdc6fb Combine setNext/PrevToMeDir to setNeighborToMeDir(boolean) and throw exception when the merge dir degree is not 1 by Anbang Xu · 12 years ago
  59. a307ce9 use setLong from cmdline by Jake Biesinger · 12 years ago
  60. aea52c1 fix P4 to use (already available) cmdline random seed by Jake Biesinger · 12 years ago
  61. 6dbee34 debugging by Jake Biesinger · 12 years ago
  62. 1b43c6b check if degree is correct in updateEdges by Jake Biesinger · 12 years ago
  63. 7b57ae6 add RandomSeed by Anbang Xu · 12 years ago
  64. c981ca3 output error vertexId and vertexValue by Anbang Xu · 12 years ago
  65. 4d5eaf2 change ingoreMissing to true by Anbang Xu · 12 years ago
  66. 2de2366 use pregelix framesize by Jake Biesinger · 12 years ago
  67. 395ce71 Merge branch 'wbiesing/debug_hyracks_build' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  68. f30f2db remove max_readid_value in genomix-data, remove all hard-coding code for genomix-hyracks by Nan Zhang · 12 years ago
  69. 440f1ff Merge branch 'anbangx/log' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  70. d0cbe03 add beefier test case for EdgeListWritable by Jake Biesinger · 12 years ago
  71. 2eff046 use java.util.logging instead of apache commons logging by Jake Biesinger · 12 years ago
  72. 20a80e6 standardize logging across eclipse-test, eclipse-main, and maven by Jake Biesinger · 12 years ago
  73. ac2e96e fix graphviz in mac OS by Anbang Xu · 12 years ago
  74. bedbf44 Merge branch 'anbangx/P1' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  75. d17a2a2 remove NLineInputFormat for hadoop graph building by Nan Zhang · 12 years ago
  76. 64bb87e Add EdgeList.unionAdd(EdgeList) by Anbang Xu · 12 years ago
  77. c33e4b7 add option for hyracks driver to have text output by Nan Zhang · 12 years ago
  78. 3f9dc1d Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  79. e830955 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  80. 24f2ead add boolean flag to switch method between P2 and P4 by Anbang Xu · 12 years ago
  81. b775a8c fix -runLocal! preglix and hyracks use different CC's, NC's and ports by Jake Biesinger · 12 years ago
  82. d7ded9c small change on hyracks_genomix by Nan Zhang · 12 years ago
  83. 522b5ff Change update condition by Anbang Xu · 12 years ago
  84. 39b490b change updateEdges for processUpdate in pathmerge by Anbang Xu · 12 years ago
  85. 3274eac try to have 2 local stes of CCs and NCs (-runLocal not working) by Jake Biesinger · 12 years ago
  86. d688f36 don't use a max number of readids on edges by Jake Biesinger · 12 years ago
  87. da9eeaf hadoop uses |IO_DIRS| * #slaves reducers by Jake Biesinger · 12 years ago
  88. a9f475d use $IO_DIRS, not -coresPerMachine for hyracks partitions + hadoop #reducers by Jake Biesinger · 12 years ago
  89. 6dfc4bb Hadoop graphbuild works! by Jake Biesinger · 12 years ago
  90. b0aed82 hadoop dist cache must be an absolute path by Jake Biesinger · 12 years ago
  91. 7294ef7 hadoop jar deployment fix by Jake Biesinger · 12 years ago
  92. 7da37db P2 internalKmer merge is completed in single path test by Anbang Xu · 12 years ago
  93. 3d9ecc5 p2 pass test 2,3 by Anbang Xu · 12 years ago
  94. d21026a shut down previous clusters again by Jake Biesinger · 12 years ago
  95. f173509 tweak cluster shutdown by Jake Biesinger · 12 years ago
  96. a56a98a read FRAME_SIZE and FRAME_LIMIT from cluster.properties by Jake Biesinger · 12 years ago
  97. bb0540c fix shutdown bug when -runLocal=false by Jake Biesinger · 12 years ago
  98. 2d358c6 runLocal is working but doesn't shut down properly by Jake Biesinger · 12 years ago
  99. db95a42 only shut down pregelix cluster if it's running by Jake Biesinger · 12 years ago
  100. 0734cd2 STATS is a separate option and DUMP_FASTA can happen after any step by Jake Biesinger · 12 years ago