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asterix-gerrit.ics.uci.edu / hyracks / 08ebf4bebd5f2c19f2c074ec463301f4c7bf3af6 / genomix / genomix-pregelix
  1. aaf3af2 Delete old LogFormatter by Anbang Xu · 12 years ago
  2. 30ecc2d Refactore FineOnlyFormatter to PathMergeFormatter by Anbang Xu · 12 years ago
  3. 1be8865 use LogUtil by Anbang Xu · 12 years ago
  4. b78d555 Don't use customer formatter anymore, everything uses java.util.Logger by Anbang Xu · 12 years ago
  5. 20a80e6 standardize logging across eclipse-test, eclipse-main, and maven by Jake Biesinger · 12 years ago
  6. 668f8a3 configure parameter of java.util.logger and prepare to test simple logger by Anbang Xu · 12 years ago
  7. a3e7a7c Add setAsCopy to VertexValueWritable and MessageWritable and format the output of Logging by Anbang Xu · 12 years ago
  8. b6e7014 Logging message in pathmerge by Anbang Xu · 12 years ago
  9. 2cde27a Add setAsCopy to MessageWritable by Anbang Xu · 12 years ago
  10. a49f0fd Add vertex.state to log by Anbang Xu · 12 years ago
  11. 4f916d6 add automatic clean log store by Anbang Xu · 12 years ago
  12. 56626a7 add loggingNode method() by Anbang Xu · 12 years ago
  13. 397aba9 Remove old state type by Anbang Xu · 12 years ago
  14. b8d4503 Delete old testcase by Anbang Xu · 12 years ago
  15. 14fb2b9 add random test et by Anbang Xu · 12 years ago
  16. e3ca759 add PathMergeLogFormatter by Anbang Xu · 12 years ago
  17. ebeba41 use ps in linux by Anbang Xu · 12 years ago
  18. d9933eb add getKmerNeighber by Anbang Xu · 12 years ago
  19. df811e5 add SymmetryChecker by Anbang Xu · 12 years ago
  20. 6c79239 add AAA testcase by Anbang Xu · 12 years ago
  21. ac2e96e fix graphviz in mac OS by Anbang Xu · 12 years ago
  22. 4c416ff Delete isFakeVertex() check by Anbang Xu · 12 years ago
  23. 3475209 Extract method name and make it meaningful by Anbang Xu · 12 years ago
  24. 8fa9d09 P1 pass all the test. P1 should be correct one and can be used to do comparison by Anbang Xu · 12 years ago
  25. 9a70cf3 Add dirMapper to mapKey in P1 by Anbang Xu · 12 years ago
  26. 11558a0 P1 pass test, except head_7(which has multiple updates) by Anbang Xu · 12 years ago
  27. 4bb7716 add testcase for P1 by Anbang Xu · 12 years ago
  28. 99ea1c4 Clean up code by Anbang Xu · 12 years ago
  29. 6a47868 Fix P1 by Anbang Xu · 12 years ago
  30. aa74657 P1 pass testcase in which #pathnode is even by Anbang Xu · 12 years ago
  31. f577a66 Exclude FakeVertex in ouput format by Anbang Xu · 12 years ago
  32. 1a7bc8b Fix a bug in sendUpdateMsg(). setMergeDir should be in the front of sendUpdateMsg by Anbang Xu · 12 years ago
  33. 64bb87e Add EdgeList.unionAdd(EdgeList) by Anbang Xu · 12 years ago
  34. eebeaf8 add isFlip to MessageFlag by Anbang Xu · 12 years ago
  35. 6744c68 Add updateMsg to P1, P1 need to deal with the case in which #pathnode is even by Anbang Xu · 12 years ago
  36. b8c534c Clean up some old P1 code by Anbang Xu · 12 years ago
  37. cca4428 Override the reduce function typically for P1 by Anbang Xu · 12 years ago
  38. 6c063e3 Adapt new broadcastMergeMsg by Anbang Xu · 12 years ago
  39. 0b163b0 add boolean flag to broadcastKillself. may deley killSelf by Anbang Xu · 12 years ago
  40. d7fb5ef fixing P1 by Anbang Xu · 12 years ago
  41. cc1135b change addEdge to unionEdge in update by Anbang Xu · 12 years ago
  42. 4b21369 Fix TandemRepeatAndCycle bug by Anbang Xu · 12 years ago
  43. 3e91447 add test case for tandem repeats with multiple self-edges by Jake Biesinger · 12 years ago
  44. 5ecb66f seperate MessageFlag and State by Anbang Xu · 12 years ago
  45. 016d7ff Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  46. 7e8075b correct the input format for P2 by Anbang Xu · 12 years ago
  47. 8c9ed0f update driver to use P2's custom input and outputformat classes by Jake Biesinger · 12 years ago
  48. 016c6f4 add P2GraphInputFormat by Anbang Xu · 12 years ago
  49. 67ae8ad ADD more testcases for pathmerge by Anbang Xu · 12 years ago
  50. 63e5756 add lock to fakenode exist check by Anbang Xu · 12 years ago
  51. db7f854 clean up useless code by Anbang Xu · 12 years ago
  52. e830955 Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  53. 385dca4 Add sychnized lock to P2 to avoid duplicate fake nodes by Anbang Xu · 12 years ago
  54. 24f2ead add boolean flag to switch method between P2 and P4 by Anbang Xu · 12 years ago
  55. 2acd0b6 Fix one bug in P2/P4 by Anbang Xu · 12 years ago
  56. ae62ffe P2 pass all the tests except cycle by Anbang Xu · 12 years ago
  57. 027051e Add flag to notice apex to updateEdge by Anbang Xu · 12 years ago
  58. e3d4c1a Succeed to apply apexMap by Anbang Xu · 12 years ago
  59. 20a03b1 add kmerAndDirWritable by Anbang Xu · 12 years ago
  60. 6485489 Final Vertex Has correct edgelist by Anbang Xu · 12 years ago
  61. fad0703 going to use different rules to identify head by Anbang Xu · 12 years ago
  62. 9de0ad3 P2 pass single tests by Anbang Xu · 12 years ago
  63. 14d58f0 remove sendOutUpdate for head(P2 debug) by Anbang Xu · 12 years ago
  64. a7405c1 add should merge dir to state by Anbang Xu · 12 years ago
  65. 522b5ff Change update condition by Anbang Xu · 12 years ago
  66. 39b490b change updateEdges for processUpdate in pathmerge by Anbang Xu · 12 years ago
  67. d429aee revert to previous initVertex behavior by Jake Biesinger · 12 years ago
  68. 99d5629 Fix a bug in configure isFlip by Anbang Xu · 12 years ago
  69. 7da37db P2 internalKmer merge is completed in single path test by Anbang Xu · 12 years ago
  70. 3d9ecc5 p2 pass test 2,3 by Anbang Xu · 12 years ago
  71. 129879d add getVertexValue in P2value type by Anbang Xu · 12 years ago
  72. d5f760c add p2 graph input format, initiate prependMergeNode and appendMergeNode by Anbang Xu · 12 years ago
  73. 188c182 add processP2Merge to P2, P2 need a specific merge method by Anbang Xu · 12 years ago
  74. dd52a40 add getMessageType and getMergeNode to P2Message by Anbang Xu · 12 years ago
  75. d94f456 using prependNode and appendNode instead of LinkedList of mergeNodes by Anbang Xu · 12 years ago
  76. 1f85b15 add parameter(mergeDest) to configureMergeMsgToNeighber by Anbang Xu · 12 years ago
  77. 5983e8b add P2ValueWritable and P2MessageWritable to P2 by Anbang Xu · 12 years ago
  78. 065eec8 Clean up io folder by Anbang Xu · 12 years ago
  79. 362358f seperate io folder to io.common and io.message by Anbang Xu · 12 years ago
  80. 183807a add GraphCleanVertexInputFormat and GraphCleanVertexOutputFormat by Anbang Xu · 12 years ago
  81. eb09388 Adapt all clean patterns to use subclass V by Anbang Xu · 12 years ago
  82. e0dff62 add MessageType class to store msg type from head by Anbang Xu · 12 years ago
  83. 01c5e31 add subclass V to extend VertexValueWritable by Anbang Xu · 12 years ago
  84. d4b0267 refactor newState to state, there is no new state by Anbang Xu · 12 years ago
  85. d488e98 refactor MessageTypeFromHead to MessageType(P2) by Anbang Xu · 12 years ago
  86. 7616083 add only old head update edges by Anbang Xu · 12 years ago
  87. 9bbef65 make name more readable, refactor setPredecessorMsg to setPredecessorToMeDir by Anbang Xu · 12 years ago
  88. f5e5816 override sendUpdateMsg without parameter by Anbang Xu · 12 years ago
  89. 38db5c3 add linkedListWritable for P2 by Anbang Xu · 12 years ago
  90. 36fb2e2 Merge with main brnach by Anbang Xu · 12 years ago
  91. f3e0fc6 only set kmerLength during first superstep in basicGraphCleanVertex by Jake Biesinger · 12 years ago
  92. 76e2d7f don't read global state during compute iterations by Jake Biesinger · 12 years ago
  93. 8f6b461 refactor pregelix job creation by Anbang Xu · 12 years ago
  94. 5cda522 format test case by Anbang Xu · 12 years ago
  95. 2246913 Small change by Anbang Xu · 12 years ago
  96. a90fdd9 update pregelix vertexes to initialize static values by Jake Biesinger · 12 years ago
  97. a1b1e45 add simple command to each pattern by Anbang Xu · 12 years ago
  98. 86edb32 change command for scaffolding by Anbang Xu · 12 years ago
  99. 423fd16 Fix all synchronization issues by Anbang Xu · 12 years ago
  100. 81833a0 add scaffoldingAggregator by Anbang Xu · 12 years ago