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asterix-gerrit.ics.uci.edu / hyracks / 07acebba2c4470834919a82092faec0c982411e5 / genomix / genomix-pregelix / src
  1. 07acebb Merge MergeBubbleMessageWritable to MessageWritable by Anbang Xu · 12 years ago
  2. ac6a090 Fix BubbleAddVertex and pass test by Anbang Xu · 12 years ago
  3. 6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
  4. ec095b2 RemoveTipVertex pass test by Anbang Xu · 12 years ago
  5. 95c432c BridgeAddVertex pass test by Anbang Xu · 12 years ago
  6. 6f81b59 small update by Anbang Xu · 12 years ago
  7. 714d906 adapt BridgeAddVertex to new graph construction by Anbang Xu · 12 years ago
  8. d1075a0 adapt TipAddVertex to new graph construction by Anbang Xu · 12 years ago
  9. aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
  10. 34d3d73 there is an issue in KmerListWritable and try to fix it by Anbang Xu · 12 years ago
  11. 94e075b update for merge by Anbang Xu · 12 years ago
  12. 6ee7bdf fix HashSet in SplitRepeat by Anbang Xu · 12 years ago
  13. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  14. d57d7e5 add CreatedVertex and ConnectedTable by Anbang Xu · 12 years ago
  15. 37c6933 start coding SplitRepeat by Anbang Xu · 12 years ago
  16. 5412086 refactor LogAlgorithm to P2 by Anbang Xu · 12 years ago
  17. 9db1ea8 merge MapReduceVertex to p2 and p2 is completed by Anbang Xu · 12 years ago
  18. d94f5f9 refactor 'BasicPathMergeVertex' to 'BasicGraphCleanVertex', make it more general by Anbang Xu · 12 years ago
  19. 29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
  20. 5dfa7b6 add MapReduceVertex for mapper/reducer in pregel by Anbang Xu · 12 years ago
  21. d6276e7 p2 pass test by Anbang Xu · 12 years ago
  22. b8e0097 p2 pass test9 by Anbang Xu · 12 years ago
  23. 9e00650 p2 pass all the tests except 9 by Anbang Xu · 12 years ago
  24. 2990977 debugging p2 by Anbang Xu · 12 years ago
  25. 1307443 P2 pass test1,2,3,4 by Anbang Xu · 12 years ago
  26. d253d8f fix mergeWithRFKmer by Anbang Xu · 12 years ago
  27. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  28. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  29. 311001a start to change graph clean part to 'contrail-graph' structure by Anbang Xu · 12 years ago
  30. 4e9262f add GenomixMapper for new graph - 'contrail' by Anbang Xu · 12 years ago
  31. 8dbe728 refactor 'size' to 'kmerByteSize' in KmerBytesWritable by Anbang Xu · 12 years ago
  32. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  33. c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
  34. b1ccba9 p4 pass test by Anbang Xu · 12 years ago
  35. b3c4a2b removeTip pass all the tests by Anbang Xu · 12 years ago
  36. 9378de1 change directionFlag back by Anbang Xu · 12 years ago
  37. 3054c15 clear the code and fix messageFlag by Anbang Xu · 12 years ago
  38. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  39. da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
  40. 93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
  41. e6d7e7a code review with Jake by AnbangX · 12 years ago
  42. 3819c94 add stop condition for p2 by AnbangX · 12 years ago
  43. 74c645c send msg to bidirection in p2 by AnbangX · 12 years ago
  44. e1dbea7 add subclass BasicVertex and fixing p2 by AnbangX · 12 years ago
  45. d2e7e86 fix path merge flaws by AnbangX · 12 years ago genomix/one_direction v2.0
  46. 2a9137c finish p4 by AnbangX · 12 years ago
  47. b7b66eb correct p4 by AnbangX · 12 years ago
  48. 730ed8a some updates by AnbangX · 12 years ago
  49. 342d65b add p4 for path merge by AnbangX · 12 years ago
  50. 7984e2b p3 path merge pass test by AnbangX · 12 years ago
  51. 46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  52. cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
  53. f60ef35 add test for graph build by AnbangX · 12 years ago
  54. 0d3ec57 update data clean 2013-06-06 by AnbangX · 12 years ago
  55. fd8c69a update 2013-6-4 by Anbang Xu · 12 years ago
  56. 0ae1c4c add data clean by AnbangX · 12 years ago
  57. 631482f add first small test case by AnbangX · 12 years ago
  58. 30f28d0 new code for bi-direction graph build by AnbangX · 12 years ago
  59. f5d6db9 change all input and output format to new version by AnbangX · 12 years ago
  60. a6e78ab do some changes to test git rebase by AnbangX · 12 years ago
  61. b19726a change code format in p3 by AnbangX · 12 years ago genomix/pre-velvet-graph
  62. 5af9dff finish debug in p3 by AnbangX · 12 years ago
  63. e04250d add p3 by AnbangX · 12 years ago
  64. e406bf5 add hyrack format by AnbangX · 12 years ago
  65. dff6815 add kmer factory by AnbangX · 12 years ago
  66. fb0c262 add global variable by AnbangX · 12 years ago
  67. 4b6126b use byte to check isCycle by AnbangX · 12 years ago
  68. 685b3cd add the iteraion option by AnbangX · 12 years ago
  69. cbdb971 delete extra class by AnbangX · 12 years ago
  70. 4b84334 format the code by AnbangX · 12 years ago
  71. 9a6b70b add incomingMsg and outgoingMsg and do some optimization after code review by AnbangX · 12 years ago
  72. 29973b0 add one condition by AnbangX · 12 years ago vault/fullstack_genomix
  73. 48f3635 delete some log by AnbangX · 12 years ago
  74. e4d4c6e add more log by AnbangX · 12 years ago
  75. 1d841e8 add debug code by AnbangX · 12 years ago
  76. 61955b4 add log to debug by AnbangX · 12 years ago
  77. 326f573 change outputformat for test by AnbangX · 12 years ago
  78. df7c076 add filter path class by AnbangX · 12 years ago
  79. cfc37ee update new code and test in ipubmed by AnbangX · 12 years ago
  80. 1669862 add test to filter specific path by AnbangX · 12 years ago
  81. 03eeda0 uniform the output format by AnbangX · 12 years ago
  82. eae1289 add testcase by AnbangX · 12 years ago
  83. ef51a0a reset maxIteration by AnbangX · 12 years ago
  84. 950d05e add more testcase by AnbangX · 12 years ago
  85. 02b2df5 add testcase by AnbangX · 12 years ago
  86. a241656 add test utility by AnbangX · 12 years ago
  87. 92fc6a6 add path merge test case by AnbangX · 12 years ago
  88. f359983 change byte represent in all method by AnbangX · 12 years ago
  89. db5db2d use byte to represent state and messgeType by AnbangX · 12 years ago
  90. d9c2637 reduce some duplicate message communication and change int to byte by AnbangX · 12 years ago
  91. ee94af1 add iteration parameter by AnbangX · 12 years ago
  92. f11a472 add two step of log algorithm version by AnbangX · 12 years ago
  93. f60dab2 delete test code by AnbangX · 12 years ago
  94. b3ca05f delete unuse variable by AnbangX · 12 years ago
  95. de1b24d change ValueWritable.toString by AnbangX · 12 years ago
  96. b5d8e9b use deleteVertexId() instead of set state by AnbangX · 12 years ago
  97. 200fa1f use set state=DELETE instead of deleteVertexId() because deleteVertexId() causes exception by AnbangX · 12 years ago
  98. e72c849 fix the bug of naive and log algorithm by AnbangX · 12 years ago
  99. 7f09f7e change code architect and use VKmerBytesWritable instead of byte[] by AnbangX · 12 years ago
  100. 2bfbe83 add back old version of Kmer to support genomix-pregelix by JavierJia · 12 years ago