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asterix-gerrit.ics.uci.edu / hyracks / 034979c2eaf9690333e415a68345772dd7cb25f4
  1. 034979c Partial refactor following edge type changes in NodeWritable by Jake Biesinger · 12 years ago
  2. 82aca33 Refactor merging into NodeWritable and add tests by Jake Biesinger · 12 years ago
  3. 2b9ba78 Starting on NodeWritable merge by Jake Biesinger · 12 years ago
  4. 473c225 Consolidate edges and threads into a single element by Jake Biesinger · 12 years ago
  5. 76f4101 add license header to NodeWritable (can't we just have it in ONE place?) by Jake Biesinger · 12 years ago
  6. 14df82f Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  7. b1c9c7d P1ForPathMergeVertex is completed, but one issue about even length and message from both size can't be solve by Anbang Xu · 12 years ago
  8. 13348bf Graph construcion is completed by Anbang Xu · 12 years ago
  9. 67c7e22 debuging SplitRepeatVertex by Anbang Xu · 12 years ago
  10. bb8e581 Complete NaiveBFSTraverse and make more test cases by Anbang Xu · 12 years ago
  11. d282e07 argumented graph building pass test successfully by Nan Zhang · 12 years ago
  12. 1de8032 Half done BFSTraverseVertex Framework by Anbang Xu · 12 years ago
  13. b965efd modify pom by Nan Zhang · 12 years ago
  14. 88d6cb5 modify the pom by Nan Zhang · 12 years ago
  15. f010494 adapt new NodeWritable and extends it in VertexValue by Anbang Xu · 12 years ago
  16. 361916b save current state by Anbang Xu · 12 years ago
  17. 7f3e343 add the unmerged graph job by Nan Zhang · 12 years ago
  18. 52bda5c add new graph result to PathMergeTestSet by Anbang Xu · 12 years ago
  19. 813f143 adapt pregel package to new graph by Anbang Xu · 12 years ago
  20. 7812d08 Augment graph construction(hadoop) -- add ThreadList and 5PReaedId by Anbang Xu · 12 years ago
  21. 399fc4a NodeWritable: refactor getListFromDir to getEdgeList by Jake Biesinger · 12 years ago
  22. 211d79c use direction flag as only public interface for nodewritable edges and threads by Jake Biesinger · 12 years ago
  23. 2065960 NodeWritable: Remove nodeIdList, refactor edges, add threads, add start/end reads by Jake Biesinger · 12 years ago
  24. 9c6fe97 starting changes to NodeWritable by Jake Biesinger · 12 years ago
  25. 580f6cd add vertex.activate() to notice update and change DirectionFlag to 2 bits by Anbang Xu · 12 years ago
  26. e35e302 add driver by Nan Zhang · 12 years ago
  27. b4c6e09 Complete the Argumented graph building by Nan Zhang · 12 years ago
  28. 70e6a0f Merge commit '62a61f6f3435116cf2202a6c61580aa6b689eacf' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  29. 16851a3 Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  30. 62a61f6 NodeWritable: refactor getListFromDir to getEdgeList by Jake Biesinger · 12 years ago
  31. 64f07c9 use direction flag as only public interface for nodewritable edges and threads by Jake Biesinger · 12 years ago
  32. 47fc29c NodeWritable: Remove nodeIdList, refactor edges, add threads, add start/end reads by Jake Biesinger · 12 years ago
  33. b6122b5 starting changes to NodeWritable by Jake Biesinger · 12 years ago
  34. 8ded1a3 Clean genomix package and complete mergeing with Master by Anbang Xu · 12 years ago
  35. c5e5abc remove dependency on hyracks-hdfs-core test-jar by Jake Biesinger · 12 years ago
  36. 05fc10d clean pregel package for latest master by Anbang Xu · 12 years ago
  37. 1afcd2b add graph package by Anbang Xu · 12 years ago
  38. dfd2e50 fix genomix pom.xml's to use 0.2.10-SNAPSHOT by Jake Biesinger · 12 years ago
  39. 32558aa Clean up extra files after merge... how were these even still around? Merge COMPLETE by Jake Biesinger · 12 years ago
  40. ced8a4a finish merge of master into genomix branch by Jake Biesinger · 12 years ago
  41. 13d0957 Resolve the conflict by Anbang Xu · 12 years ago
  42. de4e506 clean code by Nan Zhang · 12 years ago
  43. 91c3024 Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  44. e0b35ce Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  45. be39f91 Add AverageCoverage to graph construction(hadoop) and make graphviz more pretty by Anbang Xu · 12 years ago
  46. 7884b00 Merge branch 'genomix/fullstack_genomix' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  47. ac6b1a6 RemoveBridge pass test and add RemoveLowCoverage and Scaffolding by Anbang Xu · 12 years ago
  48. 4a5ee49 Hadoop TestSuite is completed and P2 pass test by Anbang Xu · 12 years ago
  49. 153c2d5 add expected results by Nan Zhang · 12 years ago
  50. 59dcf8a add basic type for hadoop by Nan Zhang · 12 years ago
  51. 18c032a make TestSuite for graph building(hadoop) by Anbang Xu · 12 years ago
  52. 61bfb93 add computeSimilarity and mergeAverageCoverage to MergeBubbleVertex by Anbang Xu · 12 years ago
  53. 4ac4a5b Merge branch 'genomix/fullstack_genomix' of https://code.google.com/p/hyracks into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  54. 3744b98 fix the pom.xml for genomix-hadoop by Nan Zhang · 12 years ago
  55. cb4391e clean pregel package for build by Anbang Xu · 12 years ago
  56. c4961c9 complete MergeBubbleVertex & wait for compute fracSimilarity by Anbang Xu · 12 years ago
  57. 3986b17 debugging BubbleMergeVertex by Anbang Xu · 12 years ago
  58. 8edaabd Add fracDissimilar to VKmer by Jake Biesinger · 12 years ago
  59. ef306ca Fix case of AssembleKeyIntoNodeOperator by Nan Zhang · 12 years ago
  60. 5f57f54 small change by Nan Zhang · 12 years ago
  61. 19b758e ervoer testUtils by Nan Zhang · 12 years ago
  62. 931fcc8 clean genomixMiniCluster by Nan Zhang · 12 years ago
  63. aeed6f0 delete the old driver by Nan Zhang · 12 years ago
  64. 852df2b complete the old code cleaning by Nan Zhang · 12 years ago
  65. 3e3144b cleanning continue by Nan Zhang · 12 years ago
  66. 7dc9400 clean the useless code for project by Nan Zhang · 12 years ago
  67. 3fc4fef Please enter the commit message for your changes. Lines starting by Nan Zhang · 12 years ago
  68. 8e8e99f Merge branch 'nanzhang/hyracks_genomix' into genomix/fullstack_genomix by Nan Zhang · 12 years ago
  69. 9cc4380 merging partial code to main branch by Nan Zhang · 12 years ago
  70. 96465fb Merge branch 'anbangx/fullstack_genomix' into genomix/fullstack_genomix by Anbang Xu · 12 years ago
  71. 6ad60bf fix bug in readFields of KmerListWritable by Anbang Xu · 12 years ago
  72. 9dc35e0 fix merge test case by Jake Biesinger · 12 years ago
  73. d235865 catch too-short kmers when trying to merge by Jake Biesinger · 12 years ago
  74. 078e20a catch attempts at merging empty kmers by Jake Biesinger · 12 years ago
  75. b072b75 Add edit distance computation for VKmers by Jake Biesinger · 12 years ago
  76. 6981f1c adapt graph construction(hadoop) to VKmer by Anbang Xu · 12 years ago
  77. ad800e8 more cleanup of setByRead interface by Jake Biesinger · 12 years ago genomix/before-nodeid-graph-cleanup-Aug2013
  78. def02ee clean up interface for VKmer setByRead by Jake Biesinger · 12 years ago
  79. 1df93be Bugfix for Hadoop bug in VKmer and PositionList by Anbang Xu · 12 years ago
  80. 6a7344b add 3 tips test cases for hyracks and add sequence file by Nan Zhang · 12 years ago
  81. b8626fd make GraphViz for test by Anbang Xu · 12 years ago
  82. 79c5ccf Merge branch 'wbiesing/genomix/VKmers' into genomix/fullstack_genomix by Jake Biesinger · 12 years ago
  83. f2f8a13 Merge branch 'master' into pouria/fix-OptzHHJ by pouria.pirzadeh · 12 years ago
  84. 25de530 Finalizing changes to fix OptimizedHashJoin by pouria.pirzadeh · 12 years ago
  85. 999f6ac add coverage for hyracks graph building by Nan Zhang · 12 years ago
  86. 07011c1 Merge commit '164cc8091571ad11261a91eed68e06d2e73ea490' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  87. 9f949c4 MergeBubbleVertex half done by Anbang Xu · 12 years ago
  88. 164cc80 add compare-by-coverage Comparator for NodeWritable by Jake Biesinger · 12 years ago
  89. 39f1cf1 Merge commit '07acebba2c4470834919a82092faec0c982411e5' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  90. 53da888 code clean by Nan Zhang · 12 years ago
  91. 42036c1 add methods for node coverage merge/add; serialize coverage by Jake Biesinger · 12 years ago
  92. 07acebb Merge MergeBubbleMessageWritable to MessageWritable by Anbang Xu · 12 years ago
  93. ac6a090 Fix BubbleAddVertex and pass test by Anbang Xu · 12 years ago
  94. 6ffdef2 add 3 SplitRepeat TestCases and fix the PositionListWitable: UnionUpdate HashSet by Nan Zhang · 12 years ago
  95. b01f330 Merge commit '50e9f8614b4124288f606d90c3417caa2b5f80de' into nanzhang/hyracks_genomix by Nan Zhang · 12 years ago
  96. 016df5f finish the debugging by Nan Zhang · 12 years ago
  97. 6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
  98. 50e9f86 add conversions for Kmer <-> VKmer by Jake Biesinger · 12 years ago
  99. ec095b2 RemoveTipVertex pass test by Anbang Xu · 12 years ago
  100. 95c432c BridgeAddVertex pass test by Anbang Xu · 12 years ago