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asterix-gerrit.ics.uci.edu / hyracks / 0217e7eaf782d93df3115ea1bd9a14e3e43a8956 / genomix / genomix-pregelix / src / test
  1. 0217e7e Adapt SplitRepeatVertex to new graph structure. TODO: test AdjSplitRepeat by Anbang Xu · 12 years ago
  2. 37a8489 Adapt MergeBubbleVertex to new graph structure. TODO: check if bubble flip and merge all metadata except kmer by Anbang Xu · 12 years ago
  3. 977a413 Adapt BridgeAddVertex and BridgeRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  4. 4370b2b adapt TipAddVertex and TipRemoveVertex to new graph structure by Anbang Xu · 12 years ago
  5. 112cdf7 Adapt MapReduceVertex and P4 to new graph structure by Anbang Xu · 12 years ago
  6. e7885ee Pregel TestSuite is completed by Anbang Xu · 12 years ago
  7. 0e037c1 Prepare to clean up pregel testSuite by Anbang Xu · 12 years ago
  8. 6f88379 save current state and prepare to clean up hadoop test result by Anbang Xu · 12 years ago
  9. 0d72095 Make generic message class for all patterns by Anbang Xu · 12 years ago
  10. b1c9c7d P1ForPathMergeVertex is completed, but one issue about even length and message from both size can't be solve by Anbang Xu · 12 years ago
  11. bb8e581 Complete NaiveBFSTraverse and make more test cases by Anbang Xu · 12 years ago
  12. 361916b save current state by Anbang Xu · 12 years ago
  13. 52bda5c add new graph result to PathMergeTestSet by Anbang Xu · 12 years ago
  14. 580f6cd add vertex.activate() to notice update and change DirectionFlag to 2 bits by Anbang Xu · 12 years ago
  15. 05fc10d clean pregel package for latest master by Anbang Xu · 12 years ago
  16. ac6b1a6 RemoveBridge pass test and add RemoveLowCoverage and Scaffolding by Anbang Xu · 12 years ago
  17. 4a5ee49 Hadoop TestSuite is completed and P2 pass test by Anbang Xu · 12 years ago
  18. 18c032a make TestSuite for graph building(hadoop) by Anbang Xu · 12 years ago
  19. 61bfb93 add computeSimilarity and mergeAverageCoverage to MergeBubbleVertex by Anbang Xu · 12 years ago
  20. cb4391e clean pregel package for build by Anbang Xu · 12 years ago
  21. c4961c9 complete MergeBubbleVertex & wait for compute fracSimilarity by Anbang Xu · 12 years ago
  22. 3986b17 debugging BubbleMergeVertex by Anbang Xu · 12 years ago
  23. 6ad60bf fix bug in readFields of KmerListWritable by Anbang Xu · 12 years ago
  24. ad800e8 more cleanup of setByRead interface by Jake Biesinger · 12 years ago genomix/before-nodeid-graph-cleanup-Aug2013
  25. ac6a090 Fix BubbleAddVertex and pass test by Anbang Xu · 12 years ago
  26. 6d8afff fix RemoveBridgeVertex and update for merge by Anbang Xu · 12 years ago
  27. ec095b2 RemoveTipVertex pass test by Anbang Xu · 12 years ago
  28. 95c432c BridgeAddVertex pass test by Anbang Xu · 12 years ago
  29. d1075a0 adapt TipAddVertex to new graph construction by Anbang Xu · 12 years ago
  30. aac7732 SimpleSplitRepeat is completed. An issue in graph building(hadoop): KmerList.appendList() doesn't check existed element by Anbang Xu · 12 years ago
  31. 6ee7bdf fix HashSet in SplitRepeat by Anbang Xu · 12 years ago
  32. 0049eac refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat by Anbang Xu · 12 years ago
  33. 5412086 refactor LogAlgorithm to P2 by Anbang Xu · 12 years ago
  34. 9db1ea8 merge MapReduceVertex to p2 and p2 is completed by Anbang Xu · 12 years ago
  35. 29ebdc8 Map/Reduce version in pregel is completed by Anbang Xu · 12 years ago
  36. 5dfa7b6 add MapReduceVertex for mapper/reducer in pregel by Anbang Xu · 12 years ago
  37. b8e0097 p2 pass test9 by Anbang Xu · 12 years ago
  38. 9e00650 p2 pass all the tests except 9 by Anbang Xu · 12 years ago
  39. 2990977 debugging p2 by Anbang Xu · 12 years ago
  40. 1307443 P2 pass test1,2,3,4 by Anbang Xu · 12 years ago
  41. d253d8f fix mergeWithRFKmer by Anbang Xu · 12 years ago
  42. a5e97c7 p4 pass test by Anbang Xu · 12 years ago
  43. 4416d3c debugging p4 by Anbang Xu · 12 years ago
  44. 970c74f move old key/value class to oldtype folder by Anbang Xu · 12 years ago
  45. c71a2d3 removeBridge pass tests by Anbang Xu · 12 years ago Alpha Alpha-Graph-v2.0
  46. b1ccba9 p4 pass test by Anbang Xu · 12 years ago
  47. b3c4a2b removeTip pass all the tests by Anbang Xu · 12 years ago
  48. 9378de1 change directionFlag back by Anbang Xu · 12 years ago
  49. f947fb8 add test suite case for removetip/removebridge/pathmerge by Anbang Xu · 12 years ago
  50. da3b802 Apply undirected graph algorithm in p2 by AnbangX · 12 years ago
  51. 93e9c22 debugging p4 and fix random seed issue by AnbangX · 12 years ago
  52. e6d7e7a code review with Jake by AnbangX · 12 years ago
  53. 2a9137c finish p4 by AnbangX · 12 years ago
  54. 7984e2b p3 path merge pass test by AnbangX · 12 years ago
  55. 46fc86e add test cases for removeBridge, removeTip and mergeBubble by AnbangX · 12 years ago
  56. cc77cf7 add test cases for path merge and other data clean patterns by AnbangX · 12 years ago
  57. f60ef35 add test for graph build by AnbangX · 12 years ago
  58. 0ae1c4c add data clean by AnbangX · 12 years ago
  59. 631482f add first small test case by AnbangX · 12 years ago
  60. f5d6db9 change all input and output format to new version by AnbangX · 12 years ago
  61. b19726a change code format in p3 by AnbangX · 12 years ago genomix/pre-velvet-graph
  62. 5af9dff finish debug in p3 by AnbangX · 12 years ago
  63. e04250d add p3 by AnbangX · 12 years ago
  64. e406bf5 add hyrack format by AnbangX · 12 years ago
  65. 4b6126b use byte to check isCycle by AnbangX · 12 years ago
  66. 685b3cd add the iteraion option by AnbangX · 12 years ago
  67. cbdb971 delete extra class by AnbangX · 12 years ago
  68. 4b84334 format the code by AnbangX · 12 years ago
  69. 1d841e8 add debug code by AnbangX · 12 years ago
  70. 61955b4 add log to debug by AnbangX · 12 years ago
  71. df7c076 add filter path class by AnbangX · 12 years ago
  72. cfc37ee update new code and test in ipubmed by AnbangX · 12 years ago
  73. 1669862 add test to filter specific path by AnbangX · 12 years ago
  74. 03eeda0 uniform the output format by AnbangX · 12 years ago
  75. eae1289 add testcase by AnbangX · 12 years ago
  76. ef51a0a reset maxIteration by AnbangX · 12 years ago
  77. 950d05e add more testcase by AnbangX · 12 years ago
  78. 02b2df5 add testcase by AnbangX · 12 years ago
  79. a241656 add test utility by AnbangX · 12 years ago
  80. 92fc6a6 add path merge test case by AnbangX · 12 years ago
  81. d9c2637 reduce some duplicate message communication and change int to byte by AnbangX · 12 years ago
  82. f11a472 add two step of log algorithm version by AnbangX · 12 years ago
  83. 200fa1f use set state=DELETE instead of deleteVertexId() because deleteVertexId() causes exception by AnbangX · 12 years ago
  84. 7f09f7e change code architect and use VKmerBytesWritable instead of byte[] by AnbangX · 12 years ago
  85. 70812cd fix some bugs of log algorithm and prepare to verify the correctness in big data by AnbangX · 12 years ago
  86. f01816c fix some bugs of log algorithm by AnbangX · 12 years ago
  87. 3c5bd0a make genomix compile with merged hyracks by buyingyi · 12 years ago
  88. c07e482 delete unuse function by anbangx · 12 years ago
  89. 235b476 change some code to rugular output format by anbangx · 12 years ago
  90. 8f7f606 delete log by anbangx · 12 years ago
  91. db6e5de change code format by anbangx · 12 years ago
  92. cdc5917 upload the graph of the test case by anbangx · 12 years ago
  93. b7c1b11 Finish verifying the correctness of Naive Algorithm and Log Algorithm by anbangx · 12 years ago
  94. 172a7dd change code structure by anbangx · 12 years ago
  95. 8af245b change code format of LoadVertex, MessageWritable by anbangx · 12 years ago
  96. f5ff29d change folder name to edu.uci.ics.genomix.pregelix by anbangx · 12 years ago
  97. 9ce8742 change code format of naive algorithm and delete some extra test code by anbangx · 12 years ago
  98. dc6c4d6 add client/drive by anbangx · 12 years ago
  99. c670a80 add binary-assembly.xml by anbangx · 12 years ago
  100. f1bf6d5 add timer by anbangx · 12 years ago