commit ef688ee4e11d03dfb087ca87ab60ff4b16dcf0e0
author Jake Biesinger <jake.biesinger@gmail.com> Fri Sep 06 17:30:45 2013 -0700
committer Jake Biesinger <jake.biesinger@gmail.com> Fri Sep 06 17:30:45 2013 -0700
tree b871883ca8a3a84a4cb34f2e2c97bed334096a3f
parent b204a4a0b185b04314cb4e4881b23cac1e20a61b

update randomdata script to log to a file and only keep error files

genomix/genomix-driver/randomdata.sh

diff --git a/genomix/genomix-driver/randomdata.sh b/genomix/genomix-driver/randomdata.sh
index 7a3aa0a..8acbfef 100755
--- a/genomix/genomix-driver/randomdata.sh
+++ b/genomix/genomix-driver/randomdata.sh
@@ -22,7 +22,10 @@
 do
     mkdir -p $OUTDIR/random_set_$i || (echo "chouldn't make the output dir $OUTDIR/random_set_$i" && exit 1)
     sort -R $INFILE | head -n $NUMLINES > $OUTDIR/random_set_$i/random.readid
-    eval "$CMD $OUTDIR/random_set_$i/random.readid"  || exit 1
+    eval "$CMD $OUTDIR/random_set_$i/random.readid" 2>&1 | tee $OUTDIR/logs/random_set_$i
+    if [ ${PIPESTATUS[0]} -eq 0 ]; then
+        rm -rf $OUTDIR/logs/random_set_$i
+    fi
 done