svn merge -r3112:3163 https://hyracks.googlecode.com/svn/branches/fullstack_asterix_stabilization svn merge -r3173:3188 https://hyracks.googlecode.com/svn/branches/fullstack_release_candidate@3234 svn merge -r3209:3233 https://hyracks.googlecode.com/svn/trunk/fullstack
git-svn-id: https://hyracks.googlecode.com/svn/branches/fullstack_genomix@3237 123451ca-8445-de46-9d55-352943316053
diff --git a/pregelix/pregelix-core/pom.xml b/pregelix/pregelix-core/pom.xml
index 5238068..576758b 100644
--- a/pregelix/pregelix-core/pom.xml
+++ b/pregelix/pregelix-core/pom.xml
@@ -1,5 +1,4 @@
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<artifactId>pregelix-core</artifactId>
<packaging>jar</packaging>
@@ -8,7 +7,7 @@
<parent>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>pregelix</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
</parent>
@@ -195,84 +194,84 @@
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>pregelix-api</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>pregelix-dataflow-std</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>pregelix-dataflow</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>hyracks-dataflow-std</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>pregelix-runtime</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>hyracks-api</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>hyracks-dataflow-common</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>hyracks-data-std</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>hyracks-storage-am-common</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>hyracks-storage-am-btree</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>hyracks-control-cc</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>hyracks-control-nc</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
@@ -286,7 +285,7 @@
<dependency>
<groupId>edu.uci.ics.hyracks.examples</groupId>
<artifactId>hyracks-integration-tests</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<scope>test</scope>
</dependency>
<dependency>
@@ -306,7 +305,7 @@
<dependency>
<groupId>edu.uci.ics.hyracks</groupId>
<artifactId>hyracks-ipc</artifactId>
- <version>0.2.3-SNAPSHOT</version>
+ <version>0.2.4-SNAPSHOT</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
diff --git a/pregelix/pregelix-core/src/main/java/edu/uci/ics/pregelix/core/driver/Driver.java b/pregelix/pregelix-core/src/main/java/edu/uci/ics/pregelix/core/driver/Driver.java
index f07a246..3a4c41b 100644
--- a/pregelix/pregelix-core/src/main/java/edu/uci/ics/pregelix/core/driver/Driver.java
+++ b/pregelix/pregelix-core/src/main/java/edu/uci/ics/pregelix/core/driver/Driver.java
@@ -75,11 +75,17 @@
try {
/** add hadoop configurations */
URL hadoopCore = job.getClass().getClassLoader().getResource("core-site.xml");
- job.getConfiguration().addResource(hadoopCore);
+ if (hadoopCore != null) {
+ job.getConfiguration().addResource(hadoopCore);
+ }
URL hadoopMapRed = job.getClass().getClassLoader().getResource("mapred-site.xml");
- job.getConfiguration().addResource(hadoopMapRed);
+ if (hadoopMapRed != null) {
+ job.getConfiguration().addResource(hadoopMapRed);
+ }
URL hadoopHdfs = job.getClass().getClassLoader().getResource("hdfs-site.xml");
- job.getConfiguration().addResource(hadoopHdfs);
+ if (hadoopHdfs != null) {
+ job.getConfiguration().addResource(hadoopHdfs);
+ }
ClusterConfig.loadClusterConfig(ipAddress, port);
LOG.info("job started");
diff --git a/pregelix/pregelix-core/src/main/java/edu/uci/ics/pregelix/core/util/PregelixHyracksIntegrationUtil.java b/pregelix/pregelix-core/src/main/java/edu/uci/ics/pregelix/core/util/PregelixHyracksIntegrationUtil.java
index 2a2e2bf..cd2a864 100644
--- a/pregelix/pregelix-core/src/main/java/edu/uci/ics/pregelix/core/util/PregelixHyracksIntegrationUtil.java
+++ b/pregelix/pregelix-core/src/main/java/edu/uci/ics/pregelix/core/util/PregelixHyracksIntegrationUtil.java
@@ -14,6 +14,7 @@
*/
package edu.uci.ics.pregelix.core.util;
+import java.io.File;
import java.util.EnumSet;
import edu.uci.ics.hyracks.api.client.HyracksConnection;
@@ -44,7 +45,7 @@
private static NodeControllerService nc2;
private static IHyracksClientConnection hcc;
- public static void init() throws Exception {
+ public static void init(String topologyFilePath) throws Exception {
CCConfig ccConfig = new CCConfig();
ccConfig.clientNetIpAddress = CC_HOST;
ccConfig.clusterNetIpAddress = CC_HOST;
@@ -53,6 +54,7 @@
ccConfig.defaultMaxJobAttempts = 0;
ccConfig.jobHistorySize = 0;
ccConfig.profileDumpPeriod = -1;
+ ccConfig.clusterTopologyDefinition = new File(topologyFilePath);
// cluster controller
cc = new ClusterControllerService(ccConfig);
@@ -64,6 +66,7 @@
ncConfig1.clusterNetIPAddress = "localhost";
ncConfig1.ccPort = TEST_HYRACKS_CC_PORT;
ncConfig1.dataIPAddress = "127.0.0.1";
+ ncConfig1.datasetIPAddress = "127.0.0.1";
ncConfig1.nodeId = NC1_ID;
nc1 = new NodeControllerService(ncConfig1);
nc1.start();
@@ -73,6 +76,7 @@
ncConfig2.clusterNetIPAddress = "localhost";
ncConfig2.ccPort = TEST_HYRACKS_CC_PORT;
ncConfig2.dataIPAddress = "127.0.0.1";
+ ncConfig2.datasetIPAddress = "127.0.0.1";
ncConfig2.nodeId = NC2_ID;
nc2 = new NodeControllerService(ncConfig2);
nc2.start();
diff --git a/pregelix/pregelix-core/src/main/resources/conf/topology-template.xml b/pregelix/pregelix-core/src/main/resources/conf/topology-template.xml
new file mode 100755
index 0000000..4710706
--- /dev/null
+++ b/pregelix/pregelix-core/src/main/resources/conf/topology-template.xml
@@ -0,0 +1,7 @@
+<cluster-topology>
+ <network-switch name="Global">
+ <network-switch name="local">
+ <terminal name="127.0.0.1"/>
+ </network-switch>
+ </network-switch>
+</cluster-topology>
\ No newline at end of file
diff --git a/pregelix/pregelix-core/src/main/resources/scripts/getip.sh b/pregelix/pregelix-core/src/main/resources/scripts/getip.sh
index e0cdf73..a691c0f 100755
--- a/pregelix/pregelix-core/src/main/resources/scripts/getip.sh
+++ b/pregelix/pregelix-core/src/main/resources/scripts/getip.sh
@@ -6,6 +6,10 @@
then
#Get IP Address
IPADDR=`/sbin/ifconfig eth0 | grep "inet " | awk '{print $2}' | cut -f 2 -d ':'`
+ if [ "$IPADDR" = "" ]
+ then
+ IPADDR=`/sbin/ifconfig em1 | grep "inet " | awk '{print $2}' | cut -f 2 -d ':'`
+ fi
if [ "$IPADDR" = "" ]
then
IPADDR=`/sbin/ifconfig lo | grep "inet " | awk '{print $2}' | cut -f 2 -d ':'`
diff --git a/pregelix/pregelix-core/src/main/resources/scripts/pregelix b/pregelix/pregelix-core/src/main/resources/scripts/pregelix
index 6997078..b1a2f74 100644
--- a/pregelix/pregelix-core/src/main/resources/scripts/pregelix
+++ b/pregelix/pregelix-core/src/main/resources/scripts/pregelix
@@ -91,7 +91,7 @@
REPO="$BASEDIR"/lib
fi
-CLASSPATH=$CLASSPATH_PREFIX:"$HADOOP_HOME"/conf:"$BASEDIR"/etc:$1
+CLASSPATH=$CLASSPATH_PREFIX:"$HADOOP_HOME"/conf:/etc/hadoop/conf:"$BASEDIR"/etc:$1
# For Cygwin, switch paths to Windows format before running java
if $cygwin; then
diff --git a/pregelix/pregelix-core/src/main/resources/scripts/startcc.sh b/pregelix/pregelix-core/src/main/resources/scripts/startcc.sh
index fe2551d..133b604 100644
--- a/pregelix/pregelix-core/src/main/resources/scripts/startcc.sh
+++ b/pregelix/pregelix-core/src/main/resources/scripts/startcc.sh
@@ -20,6 +20,12 @@
export JAVA_HOME=$JAVA_HOME
export JAVA_OPTS=$CCJAVA_OPTS
-#Launch hyracks cc script
+
chmod -R 755 $HYRACKS_HOME
-$HYRACKS_HOME/hyracks-server/target/appassembler/bin/hyrackscc -client-net-ip-address $CCHOST -cluster-net-ip-address $CCHOST -client-net-port $CC_CLIENTPORT -cluster-net-port $CC_CLUSTERPORT -max-heartbeat-lapse-periods 999999 -default-max-job-attempts 0 -job-history-size 3 &> $CCLOGS_DIR/cc.log &
+if [ -f "conf/topology.xml" ]; then
+#Launch hyracks cc script with topology
+$HYRACKS_HOME/hyracks-server/target/appassembler/bin/hyrackscc -client-net-ip-address $CCHOST -cluster-net-ip-address $CCHOST -client-net-port $CC_CLIENTPORT -cluster-net-port $CC_CLUSTERPORT -max-heartbeat-lapse-periods 999999 -default-max-job-attempts 0 -job-history-size 0 -cluster-topology "conf/topology.xml" &> $CCLOGS_DIR/cc.log &
+else
+#Launch hyracks cc script without toplogy
+$HYRACKS_HOME/hyracks-server/target/appassembler/bin/hyrackscc -client-net-ip-address $CCHOST -cluster-net-ip-address $CCHOST -client-net-port $CC_CLIENTPORT -cluster-net-port $CC_CLUSTERPORT -max-heartbeat-lapse-periods 999999 -default-max-job-attempts 0 -job-history-size 0 &> $CCLOGS_DIR/cc.log &
+fi
diff --git a/pregelix/pregelix-core/src/main/resources/scripts/startnc.sh b/pregelix/pregelix-core/src/main/resources/scripts/startnc.sh
index 6e0f90e..b059aad 100644
--- a/pregelix/pregelix-core/src/main/resources/scripts/startnc.sh
+++ b/pregelix/pregelix-core/src/main/resources/scripts/startnc.sh
@@ -46,4 +46,4 @@
cd $NCTMP_DIR
#Launch hyracks nc
-$HYRACKS_HOME/hyracks-server/target/appassembler/bin/hyracksnc -cc-host $CCHOST -cc-port $CC_CLUSTERPORT -cluster-net-ip-address $IPADDR -data-ip-address $IPADDR -node-id $NODEID -iodevices "${IO_DIRS}" &> $NCLOGS_DIR/$NODEID.log &
+$HYRACKS_HOME/hyracks-server/target/appassembler/bin/hyracksnc -cc-host $CCHOST -cc-port $CC_CLUSTERPORT -cluster-net-ip-address $IPADDR -data-ip-address $IPADDR -result-ip-address $IPADDR -node-id $NODEID -iodevices "${IO_DIRS}" &> $NCLOGS_DIR/$NODEID.log &
diff --git a/pregelix/pregelix-core/src/main/resources/scripts/stopnc.sh b/pregelix/pregelix-core/src/main/resources/scripts/stopnc.sh
index 03ce4e7..35c4794 100644
--- a/pregelix/pregelix-core/src/main/resources/scripts/stopnc.sh
+++ b/pregelix/pregelix-core/src/main/resources/scripts/stopnc.sh
@@ -5,6 +5,10 @@
PID=`ps -ef|grep ${USER}|grep java|grep 'Dapp.name=hyracksnc'|awk '{print $2}'`
if [ "$PID" == "" ]; then
+ PID=`ps -ef|grep ${USER}|grep java|grep 'hyracks'|awk '{print $2}'`
+fi
+
+if [ "$PID" == "" ]; then
USERID=`id | sed 's/^uid=//;s/(.*$//'`
PID=`ps -ef|grep ${USERID}|grep java|grep 'Dapp.name=hyracksnc'|awk '{print $2}'`
fi
diff --git a/pregelix/pregelix-core/src/test/java/edu/uci/ics/pregelix/core/join/JoinTest.java b/pregelix/pregelix-core/src/test/java/edu/uci/ics/pregelix/core/join/JoinTest.java
index 97659d4..f7cadf6 100644
--- a/pregelix/pregelix-core/src/test/java/edu/uci/ics/pregelix/core/join/JoinTest.java
+++ b/pregelix/pregelix-core/src/test/java/edu/uci/ics/pregelix/core/join/JoinTest.java
@@ -102,7 +102,7 @@
ClusterConfig.setStorePath(PATH_TO_CLUSTER_STORE);
ClusterConfig.setClusterPropertiesPath(PATH_TO_CLUSTER_PROPERTIES);
cleanupStores();
- PregelixHyracksIntegrationUtil.init();
+ PregelixHyracksIntegrationUtil.init("src/test/resources/topology.xml");
PregelixHyracksIntegrationUtil.createApp(HYRACKS_APP_NAME);
FileUtils.forceMkdir(new File(EXPECT_RESULT_DIR));
diff --git a/pregelix/pregelix-core/src/test/resources/topology.xml b/pregelix/pregelix-core/src/test/resources/topology.xml
new file mode 100755
index 0000000..4710706
--- /dev/null
+++ b/pregelix/pregelix-core/src/test/resources/topology.xml
@@ -0,0 +1,7 @@
+<cluster-topology>
+ <network-switch name="Global">
+ <network-switch name="local">
+ <terminal name="127.0.0.1"/>
+ </network-switch>
+ </network-switch>
+</cluster-topology>
\ No newline at end of file