d1582522be7f14946ea7e5b7612bb840db5af0af - hyracks

commit	d1582522be7f14946ea7e5b7612bb840db5af0af	[log] [tgz]
author	JavierJia <jianfeng.jia@gmail.com>	Wed May 15 21:37:19 2013 -0700
committer	JavierJia <jianfeng.jia@gmail.com>	Wed May 15 21:37:19 2013 -0700
tree	42190480ba2b462e8396503af0745aa727598b40
parent	4c33a7a0f1d6821129c29f93ac86fa91ecf4dd7e [diff]

finish design of NodeReferenc API

genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/data/primitive/NodeReference.java[Added - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/data/primitive/PositionListReference.java[diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/data/primitive/PositionReference.java[diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/MapKmerPositionToReadOperator.java[diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/MapReadToNodeOperator.java[Added - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/aggregators/AggregateReadIDAggregateFactory.java[diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/aggregators/MergeKmerAggregateFactory.java[diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/aggregators/MergeReadIDAggregateFactory.java[diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/io/KMerSequenceWriterFactory.java[Renamed from genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/KMerSequenceWriterFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/io/KMerTextWriterFactory.java[Renamed from genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/KMerTextWriterFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/io/NodeSequenceWriterFactory.java[Renamed from genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/NodeSequenceWriterFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/io/NodeTextWriterFactory.java[Renamed from genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/dataflow/NodeTextWriterFactory.java - diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/job/GenomixJob.java[diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/job/JobGenBrujinGraph.java[diff]
genomix/genomix-hyracks/src/main/java/edu/uci/ics/genomix/hyracks/job/JobGenStatistic.java[diff]
genomix/genomix-hyracks/src/test/java/edu/uci/ics/genomix/example/jobrun/JobRunTest.java[diff]

16 files changed

tree: 42190480ba2b462e8396503af0745aa727598b40