| commit | dfa14d30bf5f810c763a2e52b7fd3f4c19765ec2 | [log] [tgz] |
|---|---|---|
| author | Anbang Xu <anbangx@gmail.com> | Wed Jul 24 11:21:55 2013 -0700 |
| committer | Anbang Xu <anbangx@gmail.com> | Wed Jul 24 11:21:55 2013 -0700 |
| tree | 1c7b642bf8d44435e96a22d89b0b419f306adbba | |
| parent | 84e385f319a10f1a442dac0c77a65a0b65c413ca [diff] |
Fix NodeWritable and Finish contrail-graph Mapper/Reducer
diff --git a/genomix/genomix-hadoop/data/webmap/test.txt b/genomix/genomix-hadoop/data/webmap/test.txt index 17770fa..990dbd1 100644 --- a/genomix/genomix-hadoop/data/webmap/test.txt +++ b/genomix/genomix-hadoop/data/webmap/test.txt
@@ -1 +1,3 @@ 1 AATAGAAG +2 TATAGACC +3 CATAGATT
diff --git a/genomix/genomix-hadoop/src/main/java/edu/uci/ics/genomix/hadoop/contrailgraphbuilding/GenomixReducer.java b/genomix/genomix-hadoop/src/main/java/edu/uci/ics/genomix/hadoop/contrailgraphbuilding/GenomixReducer.java index e877504..1633c26 100644 --- a/genomix/genomix-hadoop/src/main/java/edu/uci/ics/genomix/hadoop/contrailgraphbuilding/GenomixReducer.java +++ b/genomix/genomix-hadoop/src/main/java/edu/uci/ics/genomix/hadoop/contrailgraphbuilding/GenomixReducer.java
@@ -33,11 +33,6 @@ Reporter reporter) throws IOException { outputNode.reset(KMER_SIZE); -// //copy first item to outputNode -// if(values.hasNext()){ -// NodeWritable tmpNode = values.next(); -// outputNode.set(tmpNode); -// } while (values.hasNext()) { tmpNode.set(values.next()); outputNode.getNodeIdList().appendList(tmpNode.getNodeIdList());