simplify hadoop graphbuilding test case
diff --git a/genomix/genomix-hadoop/src/test/java/edu/uci/ics/genomix/hadoop/velvetgraphbuilding/NewGraphBuildingTest.java b/genomix/genomix-hadoop/src/test/java/edu/uci/ics/genomix/hadoop/velvetgraphbuilding/NewGraphBuildingTest.java
index f6236d2..2517810 100644
--- a/genomix/genomix-hadoop/src/test/java/edu/uci/ics/genomix/hadoop/velvetgraphbuilding/NewGraphBuildingTest.java
+++ b/genomix/genomix-hadoop/src/test/java/edu/uci/ics/genomix/hadoop/velvetgraphbuilding/NewGraphBuildingTest.java
@@ -42,15 +42,16 @@
FileUtils.forceMkdir(new File(ACTUAL_RESULT_DIR));
FileUtils.cleanDirectory(new File(ACTUAL_RESULT_DIR));
startHadoop();
- TestGroupbyKmer();
- TestMapKmerToRead();
+// TestGroupbyKmer();
+// TestMapKmerToRead();
+ TestGroupByReadID();
cleanupHadoop();
}
public void TestGroupbyKmer() throws Exception {
GraphBuildingDriver tldriver = new GraphBuildingDriver();
tldriver.run(HDFS_PATH, RESULT_PATH, COUNT_REDUCER, SIZE_KMER, READ_LENGTH, true, false, HADOOP_CONF_PATH);
- dumpGroupByKmerResult();
+ dumpResult();
}
public void TestMapKmerToRead() throws Exception {
@@ -89,11 +90,6 @@
dfsCluster.shutdown();
}
- private void dumpGroupByKmerResult() throws IOException {
- Path src = new Path(HDFS_PATH + "-step1");
- Path dest = new Path(ACTUAL_RESULT_DIR);
- dfs.copyToLocalFile(src, dest);
- }
private void dumpResult() throws IOException {
Path src = new Path(RESULT_PATH);