diff --git a/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/client/Client.java b/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/client/Client.java
index e49063b..4014377 100644
--- a/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/client/Client.java
+++ b/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/client/Client.java
@@ -68,15 +68,18 @@
         FileOutputFormat.setOutputPath(job, new Path(options.outputPath));
         job.getConfiguration().setInt(NaiveAlgorithmForPathMergeVertex.KMER_SIZE, options.sizeKmer);
         job.getConfiguration().setInt(LogAlgorithmForPathMergeVertex.KMER_SIZE, options.sizeKmer);
+        job.getConfiguration().setInt(P3ForPathMergeVertex.KMER_SIZE, options.sizeKmer);
         if (options.numIteration > 0) {
             job.getConfiguration().setInt(NaiveAlgorithmForPathMergeVertex.ITERATIONS, options.numIteration);
             job.getConfiguration().setInt(LogAlgorithmForPathMergeVertex.ITERATIONS, options.numIteration);
             job.getConfiguration().setInt(P3ForPathMergeVertex.ITERATIONS, options.numIteration);
         }
+        
         if (options.pseudoRate > 0 && options.pseudoRate <= 1)
             job.getConfiguration().setFloat(P3ForPathMergeVertex.PSEUDORATE, options.pseudoRate);
         if (options.maxRound > 0)
             job.getConfiguration().setInt(P3ForPathMergeVertex.MAXROUND, options.maxRound);
         return options;
+        
     }
 }
diff --git a/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/operator/P3ForPathMergeVertex.java b/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/operator/P3ForPathMergeVertex.java
index e189800..44d47a0 100644
--- a/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/operator/P3ForPathMergeVertex.java
+++ b/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/operator/P3ForPathMergeVertex.java
@@ -79,7 +79,7 @@
         if(pseudoRate < 0)
             pseudoRate = getContext().getConfiguration().getFloat(PSEUDORATE, 0.2f);
         if (maxRound < 0)
-            maxRound = getContext().getConfiguration().getInt(MAXROUND, 4);
+            maxRound = getContext().getConfiguration().getInt(MAXROUND, 2);
         outgoingMsg.reset();
     }
 
diff --git a/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/sequencefile/GenerateSmallFile.java b/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/sequencefile/GenerateSmallFile.java
index 85649b3..bb288ff 100644
--- a/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/sequencefile/GenerateSmallFile.java
+++ b/genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/sequencefile/GenerateSmallFile.java
@@ -2,11 +2,13 @@
 
 import java.io.BufferedReader;
 import java.io.BufferedWriter;
+import java.io.File;
 import java.io.FileNotFoundException;
 import java.io.FileReader;
 import java.io.FileWriter;
 import java.io.IOException;
 
+import org.apache.commons.io.FileUtils;
 import org.apache.hadoop.conf.Configuration;
 import org.apache.hadoop.fs.FileSystem;
 import org.apache.hadoop.fs.Path;
@@ -46,15 +48,15 @@
     }
 
     public static void main(String[] args) throws IOException {
-        /*Path dir = new Path("data/test8m");
-        Path outDir = new Path("data/input/test");
-        FileUtils.cleanDirectory(new File("data/input/test"));
+        Path dir = new Path("data/split.aa");
+        Path outDir = new Path("data/input");
+        FileUtils.cleanDirectory(new File("data/input"));
         Path inFile = new Path(dir, "part-0");
-        Path outFile = new Path(outDir, "part-0-out-100");
-        generateNumOfLinesFromGraphBuildResuiltBigFile(inFile, outFile, 100);*/
-        String inFile = "data/shortjump_1.head8M.fastq";
+        Path outFile = new Path(outDir, "part-0-out-1000");
+        generateNumOfLinesFromGraphBuildResuiltBigFile(inFile, outFile, 1000);
+      /*  String inFile = "data/shortjump_1.head8M.fastq";
         String outFile = "data/testGeneFile";
-        generateNumOfLinesFromGraphBuildResuiltBigFile(inFile, outFile, 100000);
+        generateNumOfLinesFromGraphBuildResuiltBigFile(inFile, outFile, 100000);*/
     }
 
     public static String readTextFile(String fileName, int numOfLines) {
diff --git a/genomix/genomix-pregelix/src/test/java/edu/uci/ics/genomix/pregelix/JobGen/JobGenerator.java b/genomix/genomix-pregelix/src/test/java/edu/uci/ics/genomix/pregelix/JobGen/JobGenerator.java
index 85ab456..809ea34 100644
--- a/genomix/genomix-pregelix/src/test/java/edu/uci/ics/genomix/pregelix/JobGen/JobGenerator.java
+++ b/genomix/genomix-pregelix/src/test/java/edu/uci/ics/genomix/pregelix/JobGen/JobGenerator.java
@@ -61,6 +61,8 @@
         job.setOutputKeyClass(KmerBytesWritable.class);
         job.setOutputValueClass(ValueStateWritable.class);
         job.getConfiguration().setInt(P3ForPathMergeVertex.KMER_SIZE, 5);
+        job.getConfiguration().setFloat(P3ForPathMergeVertex.PSEUDORATE, 0.4f);
+        job.getConfiguration().setInt(P3ForPathMergeVertex.MAXROUND, 1);
         job.getConfiguration().writeXml(new FileOutputStream(new File(outputPath)));
     }