diff --git a/genomix/genomix-hadoop/target/appassembler/bin/maxclique b/genomix/genomix-hadoop/target/appassembler/bin/maxclique
deleted file mode 100644
index 5eab8d0..0000000
--- a/genomix/genomix-hadoop/target/appassembler/bin/maxclique
+++ /dev/null
@@ -1,113 +0,0 @@
-#!/bin/sh
-# ----------------------------------------------------------------------------
-#  Copyright 2001-2006 The Apache Software Foundation.
-#
-#  Licensed under the Apache License, Version 2.0 (the "License");
-#  you may not use this file except in compliance with the License.
-#  You may obtain a copy of the License at
-#
-#       http://www.apache.org/licenses/LICENSE-2.0
-#
-#  Unless required by applicable law or agreed to in writing, software
-#  distributed under the License is distributed on an "AS IS" BASIS,
-#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-#  See the License for the specific language governing permissions and
-#  limitations under the License.
-# ----------------------------------------------------------------------------
-#
-#   Copyright (c) 2001-2006 The Apache Software Foundation.  All rights
-#   reserved.
-
-
-# resolve links - $0 may be a softlink
-PRG="$0"
-
-while [ -h "$PRG" ]; do
-  ls=`ls -ld "$PRG"`
-  link=`expr "$ls" : '.*-> \(.*\)$'`
-  if expr "$link" : '/.*' > /dev/null; then
-    PRG="$link"
-  else
-    PRG=`dirname "$PRG"`/"$link"
-  fi
-done
-
-PRGDIR=`dirname "$PRG"`
-BASEDIR=`cd "$PRGDIR/.." >/dev/null; pwd`
-
-
-
-# OS specific support.  $var _must_ be set to either true or false.
-cygwin=false;
-darwin=false;
-case "`uname`" in
-  CYGWIN*) cygwin=true ;;
-  Darwin*) darwin=true
-           if [ -z "$JAVA_VERSION" ] ; then
-             JAVA_VERSION="CurrentJDK"
-           else
-             echo "Using Java version: $JAVA_VERSION"
-           fi
-           if [ -z "$JAVA_HOME" ] ; then
-             JAVA_HOME=/System/Library/Frameworks/JavaVM.framework/Versions/${JAVA_VERSION}/Home
-           fi
-           ;;
-esac
-
-if [ -z "$JAVA_HOME" ] ; then
-  if [ -r /etc/gentoo-release ] ; then
-    JAVA_HOME=`java-config --jre-home`
-  fi
-fi
-
-# For Cygwin, ensure paths are in UNIX format before anything is touched
-if $cygwin ; then
-  [ -n "$JAVA_HOME" ] && JAVA_HOME=`cygpath --unix "$JAVA_HOME"`
-  [ -n "$CLASSPATH" ] && CLASSPATH=`cygpath --path --unix "$CLASSPATH"`
-fi
-
-# If a specific java binary isn't specified search for the standard 'java' binary
-if [ -z "$JAVACMD" ] ; then
-  if [ -n "$JAVA_HOME"  ] ; then
-    if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
-      # IBM's JDK on AIX uses strange locations for the executables
-      JAVACMD="$JAVA_HOME/jre/sh/java"
-    else
-      JAVACMD="$JAVA_HOME/bin/java"
-    fi
-  else
-    JAVACMD=`which java`
-  fi
-fi
-
-if [ ! -x "$JAVACMD" ] ; then
-  echo "Error: JAVA_HOME is not defined correctly." 1>&2
-  echo "  We cannot execute $JAVACMD" 1>&2
-  exit 1
-fi
-
-if [ -z "$REPO" ]
-then
-  REPO="$BASEDIR"/lib
-fi
-
-CLASSPATH=$CLASSPATH_PREFIX:"$BASEDIR"/etc:"$REPO"/hadoop-core-0.20.2.jar:"$REPO"/commons-cli-1.2.jar:"$REPO"/xmlenc-0.52.jar:"$REPO"/commons-httpclient-3.0.1.jar:"$REPO"/commons-codec-1.3.jar:"$REPO"/commons-net-1.4.1.jar:"$REPO"/jetty-6.1.14.jar:"$REPO"/jetty-util-6.1.14.jar:"$REPO"/jasper-runtime-5.5.12.jar:"$REPO"/jasper-compiler-5.5.12.jar:"$REPO"/jsp-api-2.1-6.1.14.jar:"$REPO"/jsp-2.1-6.1.14.jar:"$REPO"/ant-1.6.5.jar:"$REPO"/commons-el-1.0.jar:"$REPO"/jets3t-0.7.1.jar:"$REPO"/servlet-api-2.5-6.1.14.jar:"$REPO"/kfs-0.3.jar:"$REPO"/hsqldb-1.8.0.10.jar:"$REPO"/oro-2.0.8.jar:"$REPO"/core-3.1.1.jar:"$REPO"/slf4j-jcl-1.6.3.jar:"$REPO"/commons-logging-1.1.1.jar:"$REPO"/slf4j-api-1.6.3.jar:"$REPO"/args4j-2.0.16.jar:"$REPO"/genomix-hadoop-0.2.3-SNAPSHOT.jar
-
-# For Cygwin, switch paths to Windows format before running java
-if $cygwin; then
-  [ -n "$CLASSPATH" ] && CLASSPATH=`cygpath --path --windows "$CLASSPATH"`
-  [ -n "$JAVA_HOME" ] && JAVA_HOME=`cygpath --path --windows "$JAVA_HOME"`
-  [ -n "$HOME" ] && HOME=`cygpath --path --windows "$HOME"`
-  [ -n "$BASEDIR" ] && BASEDIR=`cygpath --path --windows "$BASEDIR"`
-  [ -n "$REPO" ] && REPO=`cygpath --path --windows "$REPO"`
-fi
-
-exec "$JAVACMD" $JAVA_OPTS  \
-  -classpath "$CLASSPATH" \
-  -Dapp.name="maxclique" \
-  -Dapp.pid="$$" \
-  -Dapp.repo="$REPO" \
-  -Dapp.home="$BASEDIR" \
-  -Dbasedir="$BASEDIR" \
-  edu.uci.ics.maxclique.Driver \
-  "$@"
diff --git a/genomix/genomix-hadoop/target/appassembler/bin/maxclique.bat b/genomix/genomix-hadoop/target/appassembler/bin/maxclique.bat
deleted file mode 100644
index 6a043d0..0000000
--- a/genomix/genomix-hadoop/target/appassembler/bin/maxclique.bat
+++ /dev/null
@@ -1,108 +0,0 @@
-@REM ----------------------------------------------------------------------------
-@REM  Copyright 2001-2006 The Apache Software Foundation.
-@REM
-@REM  Licensed under the Apache License, Version 2.0 (the "License");
-@REM  you may not use this file except in compliance with the License.
-@REM  You may obtain a copy of the License at
-@REM
-@REM       http://www.apache.org/licenses/LICENSE-2.0
-@REM
-@REM  Unless required by applicable law or agreed to in writing, software
-@REM  distributed under the License is distributed on an "AS IS" BASIS,
-@REM  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-@REM  See the License for the specific language governing permissions and
-@REM  limitations under the License.
-@REM ----------------------------------------------------------------------------
-@REM
-@REM   Copyright (c) 2001-2006 The Apache Software Foundation.  All rights
-@REM   reserved.
-
-@echo off
-
-set ERROR_CODE=0
-
-:init
-@REM Decide how to startup depending on the version of windows
-
-@REM -- Win98ME
-if NOT "%OS%"=="Windows_NT" goto Win9xArg
-
-@REM set local scope for the variables with windows NT shell
-if "%OS%"=="Windows_NT" @setlocal
-
-@REM -- 4NT shell
-if "%eval[2+2]" == "4" goto 4NTArgs
-
-@REM -- Regular WinNT shell
-set CMD_LINE_ARGS=%*
-goto WinNTGetScriptDir
-
-@REM The 4NT Shell from jp software
-:4NTArgs
-set CMD_LINE_ARGS=%$
-goto WinNTGetScriptDir
-
-:Win9xArg
-@REM Slurp the command line arguments.  This loop allows for an unlimited number
-@REM of arguments (up to the command line limit, anyway).
-set CMD_LINE_ARGS=
-:Win9xApp
-if %1a==a goto Win9xGetScriptDir
-set CMD_LINE_ARGS=%CMD_LINE_ARGS% %1
-shift
-goto Win9xApp
-
-:Win9xGetScriptDir
-set SAVEDIR=%CD%
-%0\
-cd %0\..\.. 
-set BASEDIR=%CD%
-cd %SAVEDIR%
-set SAVE_DIR=
-goto repoSetup
-
-:WinNTGetScriptDir
-set BASEDIR=%~dp0\..
-
-:repoSetup
-
-
-if "%JAVACMD%"=="" set JAVACMD=java
-
-if "%REPO%"=="" set REPO=%BASEDIR%\lib
-
-set CLASSPATH="%BASEDIR%"\etc;"%REPO%"\hadoop-core-0.20.2.jar;"%REPO%"\commons-cli-1.2.jar;"%REPO%"\xmlenc-0.52.jar;"%REPO%"\commons-httpclient-3.0.1.jar;"%REPO%"\commons-codec-1.3.jar;"%REPO%"\commons-net-1.4.1.jar;"%REPO%"\jetty-6.1.14.jar;"%REPO%"\jetty-util-6.1.14.jar;"%REPO%"\jasper-runtime-5.5.12.jar;"%REPO%"\jasper-compiler-5.5.12.jar;"%REPO%"\jsp-api-2.1-6.1.14.jar;"%REPO%"\jsp-2.1-6.1.14.jar;"%REPO%"\ant-1.6.5.jar;"%REPO%"\commons-el-1.0.jar;"%REPO%"\jets3t-0.7.1.jar;"%REPO%"\servlet-api-2.5-6.1.14.jar;"%REPO%"\kfs-0.3.jar;"%REPO%"\hsqldb-1.8.0.10.jar;"%REPO%"\oro-2.0.8.jar;"%REPO%"\core-3.1.1.jar;"%REPO%"\slf4j-jcl-1.6.3.jar;"%REPO%"\commons-logging-1.1.1.jar;"%REPO%"\slf4j-api-1.6.3.jar;"%REPO%"\args4j-2.0.16.jar;"%REPO%"\genomix-hadoop-0.2.3-SNAPSHOT.jar
-goto endInit
-
-@REM Reaching here means variables are defined and arguments have been captured
-:endInit
-
-%JAVACMD% %JAVA_OPTS%  -classpath %CLASSPATH_PREFIX%;%CLASSPATH% -Dapp.name="maxclique" -Dapp.repo="%REPO%" -Dapp.home="%BASEDIR%" -Dbasedir="%BASEDIR%" edu.uci.ics.maxclique.Driver %CMD_LINE_ARGS%
-if ERRORLEVEL 1 goto error
-goto end
-
-:error
-if "%OS%"=="Windows_NT" @endlocal
-set ERROR_CODE=%ERRORLEVEL%
-
-:end
-@REM set local scope for the variables with windows NT shell
-if "%OS%"=="Windows_NT" goto endNT
-
-@REM For old DOS remove the set variables from ENV - we assume they were not set
-@REM before we started - at least we don't leave any baggage around
-set CMD_LINE_ARGS=
-goto postExec
-
-:endNT
-@REM If error code is set to 1 then the endlocal was done already in :error.
-if %ERROR_CODE% EQU 0 @endlocal
-
-
-:postExec
-
-if "%FORCE_EXIT_ON_ERROR%" == "on" (
-  if %ERROR_CODE% NEQ 0 exit %ERROR_CODE%
-)
-
-exit /B %ERROR_CODE%
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/ant-1.6.5.jar b/genomix/genomix-hadoop/target/appassembler/lib/ant-1.6.5.jar
deleted file mode 100644
index 3beb3b8..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/ant-1.6.5.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/args4j-2.0.16.jar b/genomix/genomix-hadoop/target/appassembler/lib/args4j-2.0.16.jar
deleted file mode 100644
index cfb6a29..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/args4j-2.0.16.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/commons-cli-1.2.jar b/genomix/genomix-hadoop/target/appassembler/lib/commons-cli-1.2.jar
deleted file mode 100644
index ce4b9ff..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/commons-cli-1.2.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/commons-codec-1.3.jar b/genomix/genomix-hadoop/target/appassembler/lib/commons-codec-1.3.jar
deleted file mode 100644
index 957b675..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/commons-codec-1.3.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/commons-el-1.0.jar b/genomix/genomix-hadoop/target/appassembler/lib/commons-el-1.0.jar
deleted file mode 100644
index 608ed79..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/commons-el-1.0.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/commons-httpclient-3.0.1.jar b/genomix/genomix-hadoop/target/appassembler/lib/commons-httpclient-3.0.1.jar
deleted file mode 100644
index cfc777c..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/commons-httpclient-3.0.1.jar
+++ /dev/null
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diff --git a/genomix/genomix-hadoop/target/appassembler/lib/commons-logging-1.1.1.jar b/genomix/genomix-hadoop/target/appassembler/lib/commons-logging-1.1.1.jar
deleted file mode 100644
index 1deef14..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/commons-logging-1.1.1.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/commons-net-1.4.1.jar b/genomix/genomix-hadoop/target/appassembler/lib/commons-net-1.4.1.jar
deleted file mode 100644
index 9666a92..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/commons-net-1.4.1.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/core-3.1.1.jar b/genomix/genomix-hadoop/target/appassembler/lib/core-3.1.1.jar
deleted file mode 100644
index ae0b635..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/core-3.1.1.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/genomix-hadoop-0.2.3-SNAPSHOT.jar b/genomix/genomix-hadoop/target/appassembler/lib/genomix-hadoop-0.2.3-SNAPSHOT.jar
deleted file mode 100644
index 9188416..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/genomix-hadoop-0.2.3-SNAPSHOT.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/hadoop-core-0.20.2.jar b/genomix/genomix-hadoop/target/appassembler/lib/hadoop-core-0.20.2.jar
deleted file mode 100644
index 0568eaf..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/hadoop-core-0.20.2.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/hsqldb-1.8.0.10.jar b/genomix/genomix-hadoop/target/appassembler/lib/hsqldb-1.8.0.10.jar
deleted file mode 100644
index e010269..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/hsqldb-1.8.0.10.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/jasper-compiler-5.5.12.jar b/genomix/genomix-hadoop/target/appassembler/lib/jasper-compiler-5.5.12.jar
deleted file mode 100644
index 2a410b4..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/jasper-compiler-5.5.12.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/jasper-runtime-5.5.12.jar b/genomix/genomix-hadoop/target/appassembler/lib/jasper-runtime-5.5.12.jar
deleted file mode 100644
index 743d906..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/jasper-runtime-5.5.12.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/jets3t-0.7.1.jar b/genomix/genomix-hadoop/target/appassembler/lib/jets3t-0.7.1.jar
deleted file mode 100644
index d87e4d1..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/jets3t-0.7.1.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/jetty-6.1.14.jar b/genomix/genomix-hadoop/target/appassembler/lib/jetty-6.1.14.jar
deleted file mode 100644
index 8c503be..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/jetty-6.1.14.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/jetty-util-6.1.14.jar b/genomix/genomix-hadoop/target/appassembler/lib/jetty-util-6.1.14.jar
deleted file mode 100644
index 8f924bb..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/jetty-util-6.1.14.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/jsp-2.1-6.1.14.jar b/genomix/genomix-hadoop/target/appassembler/lib/jsp-2.1-6.1.14.jar
deleted file mode 100644
index debfe56..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/jsp-2.1-6.1.14.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/jsp-api-2.1-6.1.14.jar b/genomix/genomix-hadoop/target/appassembler/lib/jsp-api-2.1-6.1.14.jar
deleted file mode 100644
index 1be50ab..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/jsp-api-2.1-6.1.14.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/kfs-0.3.jar b/genomix/genomix-hadoop/target/appassembler/lib/kfs-0.3.jar
deleted file mode 100644
index e517c09..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/kfs-0.3.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/oro-2.0.8.jar b/genomix/genomix-hadoop/target/appassembler/lib/oro-2.0.8.jar
deleted file mode 100644
index 23488d2..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/oro-2.0.8.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/servlet-api-2.5-6.1.14.jar b/genomix/genomix-hadoop/target/appassembler/lib/servlet-api-2.5-6.1.14.jar
deleted file mode 100644
index 6d7404f..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/servlet-api-2.5-6.1.14.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/slf4j-api-1.6.3.jar b/genomix/genomix-hadoop/target/appassembler/lib/slf4j-api-1.6.3.jar
deleted file mode 100644
index 08a6c80..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/slf4j-api-1.6.3.jar
+++ /dev/null
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diff --git a/genomix/genomix-hadoop/target/appassembler/lib/slf4j-jcl-1.6.3.jar b/genomix/genomix-hadoop/target/appassembler/lib/slf4j-jcl-1.6.3.jar
deleted file mode 100644
index c70e2ce..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/slf4j-jcl-1.6.3.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/appassembler/lib/xmlenc-0.52.jar b/genomix/genomix-hadoop/target/appassembler/lib/xmlenc-0.52.jar
deleted file mode 100644
index ec568b4..0000000
--- a/genomix/genomix-hadoop/target/appassembler/lib/xmlenc-0.52.jar
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/AdjacentWritable.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/AdjacentWritable.class
deleted file mode 100644
index fa276b9..0000000
--- a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/AdjacentWritable.class
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixCombiner.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixCombiner.class
deleted file mode 100644
index 7822c22..0000000
--- a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixCombiner.class
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixDriver$1.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixDriver$1.class
deleted file mode 100644
index 8ef8d9b..0000000
--- a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixDriver$1.class
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixDriver$Options.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixDriver$Options.class
deleted file mode 100644
index c406b17..0000000
--- a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixDriver$Options.class
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixDriver.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixDriver.class
deleted file mode 100644
index bcb5ff8..0000000
--- a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixDriver.class
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixMapper$CurrenByte.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixMapper$CurrenByte.class
deleted file mode 100644
index 15a44e2..0000000
--- a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixMapper$CurrenByte.class
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixMapper.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixMapper.class
deleted file mode 100644
index 221224f..0000000
--- a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixMapper.class
+++ /dev/null
Binary files differ
diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixReducer.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixReducer.class
deleted file mode 100644
index ab1471c..0000000
--- a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/GenomixReducer.class
+++ /dev/null
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diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/KmerBytesWritable$Comparator.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/KmerBytesWritable$Comparator.class
deleted file mode 100644
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--- a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/KmerBytesWritable$Comparator.class
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diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/KmerBytesWritable.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/KmerBytesWritable.class
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diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/ValueBytesWritable$Comparator.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/ValueBytesWritable$Comparator.class
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diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/ValueBytesWritable.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/ValueBytesWritable.class
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diff --git a/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/ValueWritable.class b/genomix/genomix-hadoop/target/classes/edu/uci/ics/graphbuilding/ValueWritable.class
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diff --git a/genomix/genomix-hadoop/target/genomix-hadoop-0.2.3-SNAPSHOT-jar-with-dependencies.jar b/genomix/genomix-hadoop/target/genomix-hadoop-0.2.3-SNAPSHOT-jar-with-dependencies.jar
deleted file mode 100644
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--- a/genomix/genomix-hadoop/target/genomix-hadoop-0.2.3-SNAPSHOT-jar-with-dependencies.jar
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diff --git a/genomix/genomix-hadoop/target/genomix-hadoop-0.2.3-SNAPSHOT.jar b/genomix/genomix-hadoop/target/genomix-hadoop-0.2.3-SNAPSHOT.jar
deleted file mode 100644
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diff --git a/genomix/genomix-hadoop/target/maven-archiver/pom.properties b/genomix/genomix-hadoop/target/maven-archiver/pom.properties
deleted file mode 100644
index 7dbdb75..0000000
--- a/genomix/genomix-hadoop/target/maven-archiver/pom.properties
+++ /dev/null
@@ -1,5 +0,0 @@
-#Generated by Maven
-#Wed Feb 20 16:45:32 PST 2013
-version=0.2.3-SNAPSHOT
-groupId=edu.uci.ics.hyracks
-artifactId=genomix-hadoop
diff --git a/genomix/genomix-hadoop/target/surefire-reports/TEST-edu.uci.ics.graphbuilding.GraphBuildingTest.xml b/genomix/genomix-hadoop/target/surefire-reports/TEST-edu.uci.ics.graphbuilding.GraphBuildingTest.xml
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--- a/genomix/genomix-hadoop/target/surefire-reports/TEST-edu.uci.ics.graphbuilding.GraphBuildingTest.xml
+++ /dev/null
@@ -1,70 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" ?>
-<testsuite failures="0" time="7.738" errors="0" skipped="0" tests="1" name="edu.uci.ics.graphbuilding.GraphBuildingTest">
-  <properties>
-    <property name="java.runtime.name" value="Java(TM) SE Runtime Environment"/>
-    <property name="sun.boot.library.path" value="/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries"/>
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-    <property name="awt.nativeDoubleBuffering" value="true"/>
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-    <property name="mrj.build" value="11M3811"/>
-    <property name="java.vm.vendor" value="Apple Inc."/>
-    <property name="java.vendor.url" value="http://www.apple.com/"/>
-    <property name="path.separator" value=":"/>
-    <property name="java.vm.name" value="Java HotSpot(TM) 64-Bit Server VM"/>
-    <property name="file.encoding.pkg" value="sun.io"/>
-    <property name="java.util.logging.config.file" value="src/test/resources/logging.properties"/>
-    <property name="user.country" value="CN"/>
-    <property name="sun.java.launcher" value="SUN_STANDARD"/>
-    <property name="sun.os.patch.level" value="unknown"/>
-    <property name="java.vm.specification.name" value="Java Virtual Machine Specification"/>
-    <property name="user.dir" value="/Users/hadoop/Desktop/fullstack_genomix/genomix/genomix-hadoop"/>
-    <property name="java.runtime.version" value="1.6.0_35-b10-428-11M3811"/>
-    <property name="java.awt.graphicsenv" value="apple.awt.CGraphicsEnvironment"/>
-    <property name="basedir" value="/Users/hadoop/Desktop/fullstack_genomix/genomix/genomix-hadoop"/>
-    <property name="java.endorsed.dirs" value="/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/endorsed"/>
-    <property name="os.arch" value="x86_64"/>
-    <property name="java.io.tmpdir" value="/var/folders/qw/7w4vv3bx43lchk4nz_4cdpxw0000gp/T/"/>
-    <property name="line.separator" value="
-"/>
-    <property name="java.vm.specification.vendor" value="Sun Microsystems Inc."/>
-    <property name="os.name" value="Mac OS X"/>
-    <property name="sun.jnu.encoding" value="EUC_CN"/>
-    <property name="java.library.path" value=".:/Library/Java/Extensions:/System/Library/Java/Extensions:/usr/lib/java"/>
-    <property name="surefire.test.class.path" value="/Users/hadoop/Desktop/fullstack_genomix/genomix/genomix-hadoop/target/test-classes:/Users/hadoop/Desktop/fullstack_genomix/genomix/genomix-hadoop/target/classes:/Users/hadoop/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/Users/hadoop/.m2/repository/org/apache/hadoop/hadoop-core/0.20.2/hadoop-core-0.20.2.jar:/Users/hadoop/.m2/repository/commons-cli/commons-cli/1.2/commons-cli-1.2.jar:/Users/hadoop/.m2/repository/xmlenc/xmlenc/0.52/xmlenc-0.52.jar:/Users/hadoop/.m2/repository/commons-httpclient/commons-httpclient/3.0.1/commons-httpclient-3.0.1.jar:/Users/hadoop/.m2/repository/commons-codec/commons-codec/1.3/commons-codec-1.3.jar:/Users/hadoop/.m2/repository/commons-net/commons-net/1.4.1/commons-net-1.4.1.jar:/Users/hadoop/.m2/repository/org/mortbay/jetty/jetty/6.1.14/jetty-6.1.14.jar:/Users/hadoop/.m2/repository/org/mortbay/jetty/jetty-util/6.1.14/jetty-util-6.1.14.jar:/Users/hadoop/.m2/repository/tomcat/jasper-runtime/5.5.12/jasper-runtime-5.5.12.jar:/Users/hadoop/.m2/repository/tomcat/jasper-compiler/5.5.12/jasper-compiler-5.5.12.jar:/Users/hadoop/.m2/repository/org/mortbay/jetty/jsp-api-2.1/6.1.14/jsp-api-2.1-6.1.14.jar:/Users/hadoop/.m2/repository/org/mortbay/jetty/jsp-2.1/6.1.14/jsp-2.1-6.1.14.jar:/Users/hadoop/.m2/repository/ant/ant/1.6.5/ant-1.6.5.jar:/Users/hadoop/.m2/repository/commons-el/commons-el/1.0/commons-el-1.0.jar:/Users/hadoop/.m2/repository/net/java/dev/jets3t/jets3t/0.7.1/jets3t-0.7.1.jar:/Users/hadoop/.m2/repository/org/mortbay/jetty/servlet-api-2.5/6.1.14/servlet-api-2.5-6.1.14.jar:/Users/hadoop/.m2/repository/net/sf/kosmosfs/kfs/0.3/kfs-0.3.jar:/Users/hadoop/.m2/repository/hsqldb/hsqldb/1.8.0.10/hsqldb-1.8.0.10.jar:/Users/hadoop/.m2/repository/oro/oro/2.0.8/oro-2.0.8.jar:/Users/hadoop/.m2/repository/org/eclipse/jdt/core/3.1.1/core-3.1.1.jar:/Users/hadoop/.m2/repository/org/apache/hadoop/hadoop-test/0.20.2/hadoop-test-0.20.2.jar:/Users/hadoop/.m2/repository/org/apache/ftpserver/ftplet-api/1.0.0/ftplet-api-1.0.0.jar:/Users/hadoop/.m2/repository/org/apache/mina/mina-core/2.0.0-M5/mina-core-2.0.0-M5.jar:/Users/hadoop/.m2/repository/org/apache/ftpserver/ftpserver-core/1.0.0/ftpserver-core-1.0.0.jar:/Users/hadoop/.m2/repository/org/apache/ftpserver/ftpserver-deprecated/1.0.0-M2/ftpserver-deprecated-1.0.0-M2.jar:/Users/hadoop/.m2/repository/commons-io/commons-io/1.3.1/commons-io-1.3.1.jar:/Users/hadoop/.m2/repository/org/slf4j/slf4j-jcl/1.6.3/slf4j-jcl-1.6.3.jar:/Users/hadoop/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar:/Users/hadoop/.m2/repository/org/slf4j/slf4j-api/1.6.3/slf4j-api-1.6.3.jar:/Users/hadoop/.m2/repository/args4j/args4j/2.0.16/args4j-2.0.16.jar:"/>
-    <property name="java.specification.name" value="Java Platform API Specification"/>
-    <property name="java.class.version" value="50.0"/>
-    <property name="sun.management.compiler" value="HotSpot 64-Bit Tiered Compilers"/>
-    <property name="os.version" value="10.8.1"/>
-    <property name="http.nonProxyHosts" value="local|*.local|169.254/16|*.169.254/16"/>
-    <property name="user.home" value="/Users/hadoop"/>
-    <property name="user.timezone" value="America/Los_Angeles"/>
-    <property name="java.awt.printerjob" value="apple.awt.CPrinterJob"/>
-    <property name="java.specification.version" value="1.6"/>
-    <property name="file.encoding" value="UTF-8"/>
-    <property name="user.name" value="hadoop"/>
-    <property name="java.class.path" value="/Users/hadoop/Desktop/fullstack_genomix/genomix/genomix-hadoop/target/surefire/surefirebooter2183187004114487162.jar"/>
-    <property name="java.vm.specification.version" value="1.0"/>
-    <property name="sun.arch.data.model" value="64"/>
-    <property name="java.home" value="/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home"/>
-    <property name="sun.java.command" value="/Users/hadoop/Desktop/fullstack_genomix/genomix/genomix-hadoop/target/surefire/surefirebooter2183187004114487162.jar /Users/hadoop/Desktop/fullstack_genomix/genomix/genomix-hadoop/target/surefire/surefire4524658770404556182tmp /Users/hadoop/Desktop/fullstack_genomix/genomix/genomix-hadoop/target/surefire/surefire7668612702385218861tmp"/>
-    <property name="java.specification.vendor" value="Sun Microsystems Inc."/>
-    <property name="user.language" value="zh"/>
-    <property name="awt.toolkit" value="apple.awt.CToolkit"/>
-    <property name="java.vm.info" value="mixed mode"/>
-    <property name="hadoop.log.dir" value="logs"/>
-    <property name="java.version" value="1.6.0_35"/>
-    <property name="java.ext.dirs" value="/Library/Java/Extensions:/System/Library/Java/Extensions:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/ext"/>
-    <property name="sun.boot.class.path" value="/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jsfd.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/classes.jar:/System/Library/Frameworks/JavaVM.framework/Frameworks/JavaRuntimeSupport.framework/Resources/Java/JavaRuntimeSupport.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/ui.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/laf.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/sunrsasign.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jsse.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/jce.jar:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/charsets.jar"/>
-    <property name="java.vendor" value="Apple Inc."/>
-    <property name="localRepository" value="/Users/hadoop/.m2/repository"/>
-    <property name="file.separator" value="/"/>
-    <property name="java.vendor.url.bug" value="http://bugreport.apple.com/"/>
-    <property name="sun.cpu.endian" value="little"/>
-    <property name="sun.io.unicode.encoding" value="UnicodeLittle"/>
-    <property name="mrj.version" value="1070.1.6.0_35-428"/>
-    <property name="socksNonProxyHosts" value="local|*.local|169.254/16|*.169.254/16"/>
-    <property name="ftp.nonProxyHosts" value="local|*.local|169.254/16|*.169.254/16"/>
-    <property name="sun.cpu.isalist" value=""/>
-  </properties>
-  <testcase time="7.683" classname="edu.uci.ics.graphbuilding.GraphBuildingTest" name="test"/>
-</testsuite>
\ No newline at end of file
diff --git a/genomix/genomix-hadoop/target/surefire-reports/edu.uci.ics.graphbuilding.GraphBuildingTest.txt b/genomix/genomix-hadoop/target/surefire-reports/edu.uci.ics.graphbuilding.GraphBuildingTest.txt
deleted file mode 100644
index ee383c5..0000000
--- a/genomix/genomix-hadoop/target/surefire-reports/edu.uci.ics.graphbuilding.GraphBuildingTest.txt
+++ /dev/null
@@ -1,4 +0,0 @@
--------------------------------------------------------------------------------
-Test set: edu.uci.ics.graphbuilding.GraphBuildingTest
--------------------------------------------------------------------------------
-Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.737 sec
diff --git a/genomix/genomix-hadoop/target/test-classes/edu/uci/ics/graphbuilding/GraphBuildingTest.class b/genomix/genomix-hadoop/target/test-classes/edu/uci/ics/graphbuilding/GraphBuildingTest.class
deleted file mode 100644
index 1609650..0000000
--- a/genomix/genomix-hadoop/target/test-classes/edu/uci/ics/graphbuilding/GraphBuildingTest.class
+++ /dev/null
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diff --git a/genomix/genomix-hadoop/target/test-classes/edu/uci/ics/utils/TestUtils.class b/genomix/genomix-hadoop/target/test-classes/edu/uci/ics/utils/TestUtils.class
deleted file mode 100644
index 1eba8b0..0000000
--- a/genomix/genomix-hadoop/target/test-classes/edu/uci/ics/utils/TestUtils.class
+++ /dev/null
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