fix HashSet in SplitRepeat
diff --git a/genomix/genomix-pregelix/src/test/java/edu/uci/ics/genomix/pregelix/JobRun/SplitRepeatmallTestSuite.java b/genomix/genomix-pregelix/src/test/java/edu/uci/ics/genomix/pregelix/JobRun/SplitRepeatSmallTestSuite.java
similarity index 97%
rename from genomix/genomix-pregelix/src/test/java/edu/uci/ics/genomix/pregelix/JobRun/SplitRepeatmallTestSuite.java
rename to genomix/genomix-pregelix/src/test/java/edu/uci/ics/genomix/pregelix/JobRun/SplitRepeatSmallTestSuite.java
index d87281d..21ffe34 100644
--- a/genomix/genomix-pregelix/src/test/java/edu/uci/ics/genomix/pregelix/JobRun/SplitRepeatmallTestSuite.java
+++ b/genomix/genomix-pregelix/src/test/java/edu/uci/ics/genomix/pregelix/JobRun/SplitRepeatSmallTestSuite.java
@@ -40,8 +40,8 @@
import edu.uci.ics.pregelix.core.util.PregelixHyracksIntegrationUtil;
@SuppressWarnings("deprecation")
-public class SplitRepeatmallTestSuite extends TestSuite {
- private static final Logger LOGGER = Logger.getLogger(SplitRepeatmallTestSuite.class.getName());
+public class SplitRepeatSmallTestSuite extends TestSuite {
+ private static final Logger LOGGER = Logger.getLogger(SplitRepeatSmallTestSuite.class.getName());
//P4ForMergeGraph/bin/read
public static final String PreFix = "data/SplitRepeat"; //"graphbuildresult";
public static final String[] TestDir = { PreFix + File.separator
@@ -123,7 +123,7 @@
List<String> onlys = getFileList(PATH_TO_ONLY);
File testData = new File(PATH_TO_JOBS);
File[] queries = testData.listFiles();
- SplitRepeatmallTestSuite testSuite = new SplitRepeatmallTestSuite();
+ SplitRepeatSmallTestSuite testSuite = new SplitRepeatSmallTestSuite();
testSuite.setUp();
boolean onlyEnabled = false;
FileSystem dfs = FileSystem.get(testSuite.conf);
diff --git a/genomix/genomix-pregelix/src/test/resources/only_splitrepeat.txt b/genomix/genomix-pregelix/src/test/resources/only_splitrepeat.txt
new file mode 100644
index 0000000..41cba34
--- /dev/null
+++ b/genomix/genomix-pregelix/src/test/resources/only_splitrepeat.txt
@@ -0,0 +1 @@
+SplitRepeatGraph.xml
\ No newline at end of file