try make with dependency
git-svn-id: https://hyracks.googlecode.com/svn/branches/fullstack_genomix@2896 123451ca-8445-de46-9d55-352943316053
diff --git a/genomix/genomix-core/pom.xml b/genomix/genomix-core/pom.xml
index 4cd78c8..3dfba8f 100644
--- a/genomix/genomix-core/pom.xml
+++ b/genomix/genomix-core/pom.xml
@@ -34,7 +34,7 @@
<configuration>
<programs>
<program>
- <mainClass>edu.uci.ics.genomix.Driver</mainClass>
+ <mainClass>edu.uci.ics.genomix.driver.Driver</mainClass>
<name>genomix</name>
</program>
</programs>
@@ -68,6 +68,13 @@
<goal>attached</goal>
</goals>
</execution>
+ <execution>
+ <id>make-my-jar-with-dependencies</id>
+ <phase>package</phase>
+ <goals>
+ <goal>single</goal>
+ </goals>
+ </execution>
</executions>
</plugin>
<plugin>
diff --git a/genomix/genomix-core/src/main/java/edu/uci/ics/genomix/job/JobGenBrujinGraph.java b/genomix/genomix-core/src/main/java/edu/uci/ics/genomix/job/JobGenBrujinGraph.java
index 88e5e5d..3b8c9aa 100644
--- a/genomix/genomix-core/src/main/java/edu/uci/ics/genomix/job/JobGenBrujinGraph.java
+++ b/genomix/genomix-core/src/main/java/edu/uci/ics/genomix/job/JobGenBrujinGraph.java
@@ -185,10 +185,6 @@
public HDFSReadOperatorDescriptor createHDFSReader(JobSpecification jobSpec)
throws HyracksDataException {
try {
- outputRec = new RecordDescriptor(new ISerializerDeserializer[] {
- null, ByteSerializerDeserializer.INSTANCE,
- ByteSerializerDeserializer.INSTANCE });
-
InputSplit[] splits = ((JobConf) conf).getInputFormat().getSplits(
(JobConf) conf, ncNodeNames.length);
@@ -205,6 +201,9 @@
public JobSpecification generateJob() throws HyracksException {
JobSpecification jobSpec = new JobSpecification();
+ outputRec = new RecordDescriptor(new ISerializerDeserializer[] {
+ null, ByteSerializerDeserializer.INSTANCE,
+ ByteSerializerDeserializer.INSTANCE });
// File input
HDFSReadOperatorDescriptor readOperator = createHDFSReader(jobSpec);