add test cases for removeBridge, removeTip and mergeBubble
diff --git a/genomix/genomix-pregelix/data/TipAddGraph/txt/test b/genomix/genomix-pregelix/data/TipAddGraph/txt/test
deleted file mode 100755
index 5c36d0a..0000000
--- a/genomix/genomix-pregelix/data/TipAddGraph/txt/test
+++ /dev/null
@@ -1,7 +0,0 @@
-(1,5) ([(1,6)] [] [] [(1,4)] GAA)
-(2,1) ([] [] [] [(1,4)] )
-(1,1) ([(1,2)] [] [] [] AAT)
-(1,2) ([(1,3)] [] [] [(1,1)] ATA)
-(1,4) ([(1,5),(2,1)] [] [] [(1,3)] AGA)
-(1,3) ([(1,4)] [] [] [(1,2)] TAG)
-(1,6) ([] [] [] [(1,5)] AAC)
diff --git a/genomix/genomix-pregelix/data/TipAddGraph/txt/.test.crc b/genomix/genomix-pregelix/data/bridgeremove/txt/.bridgeremove.crc
similarity index 100%
copy from genomix/genomix-pregelix/data/TipAddGraph/txt/.test.crc
copy to genomix/genomix-pregelix/data/bridgeremove/txt/.bridgeremove.crc
diff --git a/genomix/genomix-pregelix/data/bridgeremove/txt/bridgeremove b/genomix/genomix-pregelix/data/bridgeremove/txt/bridgeremove
new file mode 100755
index 0000000..e5fb406
--- /dev/null
+++ b/genomix/genomix-pregelix/data/bridgeremove/txt/bridgeremove
@@ -0,0 +1,7 @@
+(2,1)([(2,2)] [] [] [] GCC)
+(1,1)([(1,2)] [] [] [] AAT)
+(2,2)([(2,3)] [] [] [(2,1),(3,1)] CCT)
+(1,2)([(1,3),(3,1)] [] [] [(1,1)] ATA)
+(2,3)([] [] [] [(2,2)] CTAGCA)
+(1,3)([] [] [] [(1,2)] TAGAAC)
+(3,1)([(2,2)] [] [] [(1,2)] TAGCCT)
diff --git a/genomix/genomix-pregelix/data/TipAddGraph/txt/.test.crc b/genomix/genomix-pregelix/data/bubble_merge/txt/.bubble_merge.crc
similarity index 100%
copy from genomix/genomix-pregelix/data/TipAddGraph/txt/.test.crc
copy to genomix/genomix-pregelix/data/bubble_merge/txt/.bubble_merge.crc
diff --git a/genomix/genomix-pregelix/data/bubble_merge/txt/bubble_merge b/genomix/genomix-pregelix/data/bubble_merge/txt/bubble_merge
new file mode 100755
index 0000000..22d58bf
--- /dev/null
+++ b/genomix/genomix-pregelix/data/bubble_merge/txt/bubble_merge
@@ -0,0 +1,6 @@
+(1,5)([] [] [] [(1,4)] GAAC)
+(2,1)([(1,4)] [] [] [(1,2)] TAGCCAG)
+(1,1)([(1,2)] [] [] [] AAT)
+(1,2)([(1,3),(2,1)] [] [] [(1,1)] ATA)
+(1,4)([(1,5)] [] [] [(1,3),(2,1)] AGA)
+(1,3)([(1,4)] [] [] [(1,2)] TAG)
diff --git a/genomix/genomix-pregelix/data/TipAddGraph/txt/.test.crc b/genomix/genomix-pregelix/data/bubble_remove/txt/.bubble.crc
similarity index 100%
rename from genomix/genomix-pregelix/data/TipAddGraph/txt/.test.crc
rename to genomix/genomix-pregelix/data/bubble_remove/txt/.bubble.crc
diff --git a/genomix/genomix-pregelix/data/bubble_remove/txt/bubble b/genomix/genomix-pregelix/data/bubble_remove/txt/bubble
new file mode 100755
index 0000000..d250792
--- /dev/null
+++ b/genomix/genomix-pregelix/data/bubble_remove/txt/bubble
@@ -0,0 +1,6 @@
+(1,5)([] [] [] [(1,4)] GAAC)
+(2,1)([(1,4)] [] [] [(1,2)] TAG)
+(1,1)([(1,2)] [] [] [] AAT)
+(1,2)([(1,3),(2,1)] [] [] [(1,1)] ATA)
+(1,4)([(1,5)] [] [] [(1,3),(2,1)] AGA)
+(1,3)([(1,4)] [] [] [(1,2)] TAG)
diff --git a/genomix/genomix-pregelix/data/input/read/part-0 b/genomix/genomix-pregelix/data/input/read/part-0
index 6595dfe..d702695 100755
--- a/genomix/genomix-pregelix/data/input/read/part-0
+++ b/genomix/genomix-pregelix/data/input/read/part-0
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/read/part-1 b/genomix/genomix-pregelix/data/input/read/part-1
index 072d5f9..5bc30e8 100755
--- a/genomix/genomix-pregelix/data/input/read/part-1
+++ b/genomix/genomix-pregelix/data/input/read/part-1
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/read/part-2 b/genomix/genomix-pregelix/data/input/read/part-2
index 3d132ac..474af09 100755
--- a/genomix/genomix-pregelix/data/input/read/part-2
+++ b/genomix/genomix-pregelix/data/input/read/part-2
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/read/part-3 b/genomix/genomix-pregelix/data/input/read/part-3
index df12383..98326a6 100755
--- a/genomix/genomix-pregelix/data/input/read/part-3
+++ b/genomix/genomix-pregelix/data/input/read/part-3
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/tipremove/part-0 b/genomix/genomix-pregelix/data/input/tipremove/part-0
index a10ab8b..d45f051 100755
--- a/genomix/genomix-pregelix/data/input/tipremove/part-0
+++ b/genomix/genomix-pregelix/data/input/tipremove/part-0
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/tipremove/part-1 b/genomix/genomix-pregelix/data/input/tipremove/part-1
index 20a3078..d50e98a 100755
--- a/genomix/genomix-pregelix/data/input/tipremove/part-1
+++ b/genomix/genomix-pregelix/data/input/tipremove/part-1
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/tipremove/part-2 b/genomix/genomix-pregelix/data/input/tipremove/part-2
index aed9265..6ed28d6 100755
--- a/genomix/genomix-pregelix/data/input/tipremove/part-2
+++ b/genomix/genomix-pregelix/data/input/tipremove/part-2
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/tipremove/part-3 b/genomix/genomix-pregelix/data/input/tipremove/part-3
index 8af7223..4734cf2 100755
--- a/genomix/genomix-pregelix/data/input/tipremove/part-3
+++ b/genomix/genomix-pregelix/data/input/tipremove/part-3
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/tipremove/part-4 b/genomix/genomix-pregelix/data/input/tipremove/part-4
index 2fd77a1..84cd77d 100755
--- a/genomix/genomix-pregelix/data/input/tipremove/part-4
+++ b/genomix/genomix-pregelix/data/input/tipremove/part-4
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/tipremove/part-5 b/genomix/genomix-pregelix/data/input/tipremove/part-5
index 7eb1649..9143122 100755
--- a/genomix/genomix-pregelix/data/input/tipremove/part-5
+++ b/genomix/genomix-pregelix/data/input/tipremove/part-5
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/tipremove/part-6 b/genomix/genomix-pregelix/data/input/tipremove/part-6
index 8ae2314..14c675c 100755
--- a/genomix/genomix-pregelix/data/input/tipremove/part-6
+++ b/genomix/genomix-pregelix/data/input/tipremove/part-6
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/tipremove/part-7 b/genomix/genomix-pregelix/data/input/tipremove/part-7
index d2b9342..0c9ca53 100755
--- a/genomix/genomix-pregelix/data/input/tipremove/part-7
+++ b/genomix/genomix-pregelix/data/input/tipremove/part-7
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/unmerge_read/part-0 b/genomix/genomix-pregelix/data/input/unmerge_read/part-0
new file mode 100755
index 0000000..aab2f64
--- /dev/null
+++ b/genomix/genomix-pregelix/data/input/unmerge_read/part-0
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/unmerge_read/part-1 b/genomix/genomix-pregelix/data/input/unmerge_read/part-1
new file mode 100755
index 0000000..d7b24b3
--- /dev/null
+++ b/genomix/genomix-pregelix/data/input/unmerge_read/part-1
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/unmerge_read/part-2 b/genomix/genomix-pregelix/data/input/unmerge_read/part-2
new file mode 100755
index 0000000..f82775c
--- /dev/null
+++ b/genomix/genomix-pregelix/data/input/unmerge_read/part-2
Binary files differ
diff --git a/genomix/genomix-pregelix/data/input/unmerge_read/part-3 b/genomix/genomix-pregelix/data/input/unmerge_read/part-3
new file mode 100755
index 0000000..b7a3925
--- /dev/null
+++ b/genomix/genomix-pregelix/data/input/unmerge_read/part-3
Binary files differ