save intermediate results by default (found a bug in pregelix-core?)
diff --git a/genomix/genomix-data/src/main/java/edu/uci/ics/genomix/config/GenomixJobConf.java b/genomix/genomix-data/src/main/java/edu/uci/ics/genomix/config/GenomixJobConf.java
index 346041b..9f64baa 100644
--- a/genomix/genomix-data/src/main/java/edu/uci/ics/genomix/config/GenomixJobConf.java
+++ b/genomix/genomix-data/src/main/java/edu/uci/ics/genomix/config/GenomixJobConf.java
@@ -67,8 +67,8 @@
@Option(name = "-hdfsWorkPath", usage = "HDFS directory where pipeline temp output will be saved", required = false)
private String hdfsWorkPath;
- @Option(name = "-saveIntermediateResults", usage = "whether or not to save intermediate steps to HDFS (default: false)", required = false)
- private boolean saveIntermediateResults = false;
+ @Option(name = "-saveIntermediateResults", usage = "whether or not to save intermediate steps to HDFS (default: true)", required = false)
+ private boolean saveIntermediateResults = true;
// Graph cleaning
diff --git a/genomix/genomix-driver/src/main/java/edu/uci/ics/genomix/driver/GenomixDriver.java b/genomix/genomix-driver/src/main/java/edu/uci/ics/genomix/driver/GenomixDriver.java
index aeae637..9ec47d8 100644
--- a/genomix/genomix-driver/src/main/java/edu/uci/ics/genomix/driver/GenomixDriver.java
+++ b/genomix/genomix-driver/src/main/java/edu/uci/ics/genomix/driver/GenomixDriver.java
@@ -264,7 +264,7 @@
"-localInput", "../genomix-pregelix/data/input/reads/pathmerge",
// "-localInput", "/home/wbiesing/code/hyracks/genomix/genomix-pregelix/data/input/reads/test",
// "-localInput", "output-build/bin",
- "-localOutput", "output-simple",
+ "-localOutput", "output-skip",
// "-pipelineOrder", "BUILD,MERGE",
// "-inputDir", "/home/wbiesing/code/hyracks/genomix/genomix-driver/graphbuild.binmerge",
// "-localInput", "../genomix-pregelix/data/TestSet/PathMerge/CyclePath/bin/part-00000",