refactor 'NaiveAlgorithm' to 'P1' and add test case for SplitRepeat
diff --git a/genomix/genomix-hadoop/data/webmap/SplitRepeat.txt b/genomix/genomix-hadoop/data/webmap/SplitRepeat.txt
new file mode 100644
index 0000000..bb03d70
--- /dev/null
+++ b/genomix/genomix-hadoop/data/webmap/SplitRepeat.txt
@@ -0,0 +1,2 @@
+1 AATAG
+2 CATAC
diff --git a/genomix/genomix-hadoop/src/test/java/edu/uci/ics/genomix/hadoop/contrailgraphbuilding/GraphBuildingTest.java b/genomix/genomix-hadoop/src/test/java/edu/uci/ics/genomix/hadoop/contrailgraphbuilding/GraphBuildingTest.java
index 217e882..127ab3e 100644
--- a/genomix/genomix-hadoop/src/test/java/edu/uci/ics/genomix/hadoop/contrailgraphbuilding/GraphBuildingTest.java
+++ b/genomix/genomix-hadoop/src/test/java/edu/uci/ics/genomix/hadoop/contrailgraphbuilding/GraphBuildingTest.java
@@ -22,13 +22,13 @@
private JobConf conf = new JobConf();
private static final String ACTUAL_RESULT_DIR = "actual";
private static final String HADOOP_CONF_PATH = ACTUAL_RESULT_DIR + File.separator + "conf.xml";
- private static final String DATA_PATH = "data/webmap/pathmerge_TestSet/9";
+ private static final String DATA_PATH = "data/webmap/SplitRepeat.txt";
private static final String HDFS_PATH = "/webmap";
private static final String RESULT_PATH = "/result";
// private static final int COUNT_REDUCER = 2;
private static final int SIZE_KMER = 3;
- private static final int READ_LENGTH = 11;
+ private static final int READ_LENGTH = 5;
private MiniDFSCluster dfsCluster;
private MiniMRCluster mrCluster;